Gene CPF_0922 details

Gene Information

• Locus tag: CPF_0922
• Symbol: nrdD
• ID: 4200966
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 1085226
• End bp: 1087037
• Gene Length: 1812 bp
• Protein Length: 603 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 638081804
• Product: anaerobic ribonucleoside triphosphate reductase
• Protein accession: YP_695371
• Protein GI: 110799135
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase
• TIGRFAM ID: [TIGR02487] anaerobic ribonucleoside-triphosphate reductase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0018873
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATAATG TCAGTATAAA TAAAAGGGAT GTAAAAAAGG ATGTGAAAAA TATGTTATCT 
AGTAAGAAAA TAGTAGATGA TTATATTAAA AAAATAGACT GGAGAGTCAA TGAAAATTCC 
AATTCACCAT ATAGTTTTGG GAGTCTCAAT AAACATATAA TAGCTGAGGT TTCTAAAGAT 
TACTGGCTTA ATGAAGTTTA TAAGGATAAA AGAATAATAG ATGCTTATAA AAATGGAGAT 
ATGCATATTC ATGATCTAGG AGGATTAACA CTTTATTGTT GTGGATATTC CTTAAGAAAC 
ATAATTTTAA TGGGAGTACA GGGAATTCCT AATATTCCAA CTAGTAGTCC TGCAAAACAT 
TTTGATGCTA TATTAAATCA AATAGCTAAT TTGGTTACAA TATATCAAAA TGAGATTATG 
GGAGCCGTTG CTTTTAATTC ATTTGATACA TTATTAGCAC CTTATATAAA GAAGGATAAT 
TTAACATATG AAGAGGTTAA ACAAAATCTA CAAAACTTTA TATTTAGTAT AAATAGTAAT 
AGTAGGGCAG GAGCTGAACC AGCTTTCACT AATATTACCT TTGATCTTTT TCCACCAAAA 
GACTTAGAAA ATGACCCTGC TTTAATTGGA GATAAAATTC AAGAGTTCAC ATATAAGGAA 
TGTCAAAAAG AAATGGATAT GTTAAATAAG GCATTTTATG AACTTATGAA TGAGGGAGAT 
TATAATGGAA GACCATTTTC TTATCCAATA CCAACTTATA ATATAAACAG TAATTTTGAT 
TTTGATAATC CTAATAATGA TATGTTATTT GAGATGACAG GGAAGTTTGG GTATCCTTAC 
TTTGCAAACT TTGTTAATTC AGATATGGAT CAAAGTGATG TAAGATCAAT GTGTTGTAGA 
CTAAATCTTG ATTTAAGAGA GCTTAGAAAG AGAAATGGTG GTCTTTTTGG AAGTGGAGAT 
AGTACAGGAA GTATAGGTGT TGTTACAATA AACTTACCAA GATTGGCATA TAAACACAAA 
AATAATGAAA AAGAGTTTTT TAATGCTTTA AAAGAAATAT TGATTATAGC AAAAGATAGC 
TTAGAAAAGA AGAGAAAATG GTTAAATGAC AATATTATAA ATAAAGATAT GTTGCCGGCA 
TTTTCAACTT ATGTAGGAAC CTTGAAAAAT CATTTCAGCA CTATAGGAAT AGTTGGATTA 
AATGAGATGT GTGAAAACTT TAATGGAAAT AATATATTAA CTGAAGAAGG AATGGAGTTT 
TCAATAAAGG TTTGTAATTT CATAAGAGAA GAATTAATAA ACTTTCAAGA AGAAACAGGA 
AATCTTTATA ATTTTGAGGC TACTCCAGCT GAATCAACTT GTTATAGATT AGCTAAAAAG 
GATGTAGAGG ACTTTGAGGA TATTATAGTT AGAGGGGGAA GAGAATATCC ATACTATACA 
AACTCATGTC ATATGCCGCC TAATGAAGTT AAAAACTTAA AGCAATTATT TGATCACCAA 
GATAAGCTTC AAGTGTTATT CACAGGAGGA ACTGTGGTGC ATATTTATTG TGATGGAGCT 
ATAAGTGGAG AAAAGTCAAA ACACATAGTA AATACAGTTT GTAAGAAATA TAGAACACCT 
TATGTAAGTA TTTCTCCTTT AAATAGATAC TGTAAAGAGC ATGGATATGT AAAGGAAAGG 
GTAGAAGAGT GTCCTATATG TGGCAAAAAG CTAGATTTAT ATCAAAGAAT AACAGGCTAC 
TTAAGAAAAG TTGAATTCTT TAATGATGGT AAAAAATCAG AATTTAAGGA TAGAAATCAG 
TTAAGCCTAT GA 

 

Protein sequence

MYNVSINKRD VKKDVKNMLS SKKIVDDYIK KIDWRVNENS NSPYSFGSLN KHIIAEVSKD 
YWLNEVYKDK RIIDAYKNGD MHIHDLGGLT LYCCGYSLRN IILMGVQGIP NIPTSSPAKH 
FDAILNQIAN LVTIYQNEIM GAVAFNSFDT LLAPYIKKDN LTYEEVKQNL QNFIFSINSN 
SRAGAEPAFT NITFDLFPPK DLENDPALIG DKIQEFTYKE CQKEMDMLNK AFYELMNEGD 
YNGRPFSYPI PTYNINSNFD FDNPNNDMLF EMTGKFGYPY FANFVNSDMD QSDVRSMCCR 
LNLDLRELRK RNGGLFGSGD STGSIGVVTI NLPRLAYKHK NNEKEFFNAL KEILIIAKDS 
LEKKRKWLND NIINKDMLPA FSTYVGTLKN HFSTIGIVGL NEMCENFNGN NILTEEGMEF 
SIKVCNFIRE ELINFQEETG NLYNFEATPA ESTCYRLAKK DVEDFEDIIV RGGREYPYYT 
NSCHMPPNEV KNLKQLFDHQ DKLQVLFTGG TVVHIYCDGA ISGEKSKHIV NTVCKKYRTP 
YVSISPLNRY CKEHGYVKER VEECPICGKK LDLYQRITGY LRKVEFFNDG KKSEFKDRNQ 
LSL