Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_0712 |
Symbol | |
ID | 4202934 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 846213 |
End bp | 846692 |
Gene Length | 480 bp |
Protein Length | 159 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 638081597 |
Product | ECF subfamily RNA polymerase sigma factor |
Protein accession | YP_695164 |
Protein GI | 110800215 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0820498 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTTCTC AAGCAAAGAA AGGAGATAAG GATGCCTTTT TAAGTCTTAT AGATGAGAAT AGATTAAGTA TCTATAGGGT TGCTAGGGGA ATTTTAAATA ACAAGGAAGA CATAGAAGAT GCACTTCATA ATACAATAAT AAAATCTTAT GAGAAGATAG GAACTTTAAA AAAGGATGAA TTCTTTAAAA CTTGGATAAT AAGGATTTTA ATAAATGAGT GTAATTTGAT ATTAAGAAGA AATAAAAAGA CCATATTTTT AGATAAGTTA GAAAATGAAA AGTCCTATAG TGATGACTAT GGGAATATTG AGTTAACATC TGTAGTTAAT TCATTAAGCG AGGATTTAAG AATAACTACA GTATTATATT ATTTTGAAGA TATGTCTACT AAAGAGATAT CAGAAATGTT AAATATAGCT GAAGGAACAG TAAGATCAAG ACTGGCTAGG GCAAGAGAAA AGCTTAGAGA TTTTATATAA
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Protein sequence | MVSQAKKGDK DAFLSLIDEN RLSIYRVARG ILNNKEDIED ALHNTIIKSY EKIGTLKKDE FFKTWIIRIL INECNLILRR NKKTIFLDKL ENEKSYSDDY GNIELTSVVN SLSEDLRITT VLYYFEDMST KEISEMLNIA EGTVRSRLAR AREKLRDFI
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