Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_0556 |
Symbol | |
ID | 4203679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 664125 |
End bp | 665510 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 638081438 |
Product | ABC transporter, solute-binding protein |
Protein accession | YP_695010 |
Protein GI | 110800185 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.526712 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGAA AATTAGTTAA AATGCTAACT GTTGCATGTG TTACCGCTAT AGCTGCCTCT GCATTTGTTG GATGTGGAAA TAAAGAAGAG GCACCAAAAG ATAATGAAAA GCCATCAACT GAACAAGCTG AAGGTTCAGG AGAGAAAAAG GTTTTAGAAA TAGCTGTTTT TGAAGGTGGA TTTGGTAAGG ATTACTGGGA TGCTTGTATA GATGCCTTTG AAGCTGAGCA CCCAGATGTA GAAGTTAAGA TGGAAGCTAA TCCTAAAATA GGTGATATTA TAAGACCTAA ATTATCATCA GAAAATACAC CTGACTTTAT ATACTTAAGT ACAAATGACC AATCAGGTAT AGCTAATGCT TTAATAAAGG ATAAAGCTTT AGTAGATTTA AGTGATGTAT TTGATAGAGA AGATCCAGAT AATCCAGGAC AAAAATTAAA AGATAAAATA TTACCAGGAT TTTTAGATAC ACCACTTACA ACTCCATATG GAGATGGAAA AGTATTCTTA GCACCACTTT ACTATAATGT TACAGGTATG TGGTATAACA AAGCATTATT CAAAGAAAAA GGATGGGAAG TTCCAAAAAC TTGGGATGAG TTCTTTGAAT TAGGTAAGAA GGCAAAAGAT GAGGGAATAG CTCTTTATAC TTATCAAGGA CAAGCGCCAG GATATAACGA GGCTGTAATA TTCCCAATGT TAGCTAGTGC AGCTGGAGAA GAAGCTGTAG AAAAGATATT CAACTATGAA GAAGGTGCTT GGAAAGATCC AAATGTTAAA AAAGCATTAG ATGTATTCCA AAGAATGGCT GATGAGGACA TGGTTCTTAA TGGAACAGTT GGTATGACTC ATACTCAAGC ACAAGTTGAA TTCTTAAATG GAAAAGCATT ATTCTTACCA TGTGGTAGCT GGTTAGAAGG AGAAATGAAA GATGCTATAC CAGAAGGATT TGAGTTTGGA TTTATGGCTC CACCAGCATT TAAAGAAGGG GATACTCCAT ATGTAACTAC TACAATAGAG CAAATGTATA TCCCAGCTAA ATCAGATCAA GTTGAATTAG CAAAAGAATT CTTAGCATTC CAATATACAG ATGCTATGGT TCAAAAGAAT GCTGAAATAG CTAAGGCTGT AGTTCCAGTT AAGGGAGCAG TTGAAAAAGC TAAATCTTCA TTAGATGCAT CAGGATATGA GTCTTATAAG TTTGTTGAAG AAGGTGCTAA ACCAATTCCA CTTTCATTTA AACCAACAAA CTCTAAACTA GATTTTAGAA ATGATAGTTT ATTTGGACCA GTAGGAAGTA TTATAAATAA AGAATTAACA GTTGATGAAT GGATTAATAA CTTAGAATCT GATTCACAAA CTCTTGCTAA AGAAGTTGTT GAATAA
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Protein sequence | MKRKLVKMLT VACVTAIAAS AFVGCGNKEE APKDNEKPST EQAEGSGEKK VLEIAVFEGG FGKDYWDACI DAFEAEHPDV EVKMEANPKI GDIIRPKLSS ENTPDFIYLS TNDQSGIANA LIKDKALVDL SDVFDREDPD NPGQKLKDKI LPGFLDTPLT TPYGDGKVFL APLYYNVTGM WYNKALFKEK GWEVPKTWDE FFELGKKAKD EGIALYTYQG QAPGYNEAVI FPMLASAAGE EAVEKIFNYE EGAWKDPNVK KALDVFQRMA DEDMVLNGTV GMTHTQAQVE FLNGKALFLP CGSWLEGEMK DAIPEGFEFG FMAPPAFKEG DTPYVTTTIE QMYIPAKSDQ VELAKEFLAF QYTDAMVQKN AEIAKAVVPV KGAVEKAKSS LDASGYESYK FVEEGAKPIP LSFKPTNSKL DFRNDSLFGP VGSIINKELT VDEWINNLES DSQTLAKEVV E
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