Gene CPF_0546 details

Gene Information

• Locus tag: CPF_0546
• Symbol: ribD
• ID: 4202761
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 651933
• End bp: 653048
• Gene Length: 1116 bp
• Protein Length: 371 aa
• Translation table: 11
• GC content: 27%
• IMG OID: 638081428
• Product: riboflavin biosynthesis protein RibD
• Protein accession: YP_695000
• Protein GI: 261876153
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGAAGGAG AGGATAACTT GGATGAATTT TTTATGAAAA AAGCTTTGGA ATTAGCTAGA 
AAAGGAGAGG GATATGTAAA TCCAAATCCT TTGGTAGGAG CTGTTATTGT TAAGGGTGGA 
GAAATAATAG GACAAGGATA TCATGAGTTT TTTGGAGGAA ATCATGCTGA AATTAATGCT 
ATTAATAGTT CTATTAAATC TACTGAGGGA GCAACAATAT ATGTTACCTT AGAACCTTGT 
TGTCACTATG GTAAAACTCC TCCATGTATA GAAGCCATAA TTAAAAATAA ATTTAAGAGA 
GTAGTAGTTG GAACCTTAGA CCAAAATCCT TTAGTATCAG GAAAGAGTAT TAAAATTTTA 
AGAGAGTCAG GCATAGAGGT TAAGGTAGGA GTTTTAGAAA AGGAATGTAT TAGATTAAAT 
GAGATATTTA ATTTTTATAT TAAGGAAAAC AGACCTTTTA TTGCACTTAA ATGGGCAATG 
ACCTTAGATG GAAAAATAGC AACTAAGGAA TTTAAATCAA AATGGATAAC TAATAGAAAA 
TCAAGAGAGT TTGTTCATTC CTTAAGAAAT AAATATAGCT CAATAATGGT TGGAATAAAT 
ACTGTTTTAA AGGATAATCC AGATTTAAGA TGTAGACTTA ATAAAAATAA AGAGTTAGAA 
AGAAAGCATT TTAGGATAGT ACTTGATAGT AAATTAAGAA TTCCTTTAGA TTCAGAAATA 
TTAAAAAATC AAAATGAGTC AAAAACCTTA ATTTTTACAA CAAATAAAAA AGATAAGATA 
AAAAATGAAA AATTAAAAGA TATAGGTATA GAGGTAATAG AAGTAAATTT AGATGAAGGA 
AAAATTAATA TTAATCAGGT TTTAGAGTGT TTAAAAGAAA AAAATATTGA TTCAGTTCTT 
ATTGAAGGAG GAGGAAATTT AAATTTTACT TTTTTAGAAA ATAAAAAAGT AAATAAGATA 
TATGCCTTTG TTGCACCAAA AGTTTTTGGA GGAAAAAATG CTATTACTCC TGTTGAAGGG 
GAAGGAATAA GAAATGTTTT AGACGCCTTT GAATTTCCTG AAGTAAATTT GAAGAATTTT 
GATAAGGATA TTTTAATTGA ATGTGGCCTT AGTTAA 

 

Protein sequence

MEGEDNLDEF FMKKALELAR KGEGYVNPNP LVGAVIVKGG EIIGQGYHEF FGGNHAEINA 
INSSIKSTEG ATIYVTLEPC CHYGKTPPCI EAIIKNKFKR VVVGTLDQNP LVSGKSIKIL 
RESGIEVKVG VLEKECIRLN EIFNFYIKEN RPFIALKWAM TLDGKIATKE FKSKWITNRK 
SREFVHSLRN KYSSIMVGIN TVLKDNPDLR CRLNKNKELE RKHFRIVLDS KLRIPLDSEI 
LKNQNESKTL IFTTNKKDKI KNEKLKDIGI EVIEVNLDEG KININQVLEC LKEKNIDSVL 
IEGGGNLNFT FLENKKVNKI YAFVAPKVFG GKNAITPVEG EGIRNVLDAF EFPEVNLKNF 
DKDILIECGL S