| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0507 |
|---|
| Symbol | |
|---|
| ID | 4202031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 603845 |
|---|
| End bp | 605701 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 638081389 |
|---|
| Product | ABC transporter, permease/ATP-binding protein |
|---|
| Protein accession | YP_694961 |
|---|
| Protein GI | 110800402 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAG AAAGAAAAGG CGGAATGGGC GGCCAAATGG GTAGAATGGG CGGAGGCCCA
AGAGCCGTTG AAAAAGCAAA AGATTTTAAA GGAACAATGA AAAAGCTTGG GGTTTATTTA
AAACCTTATA GTTTATCTAT AGCTATTGTA ATATTATTTG CTATAGGAAG TGCTGCCTTC
TCAATTGTAG GACCTAAGAT TTTAGGTAAA GCCACTACTA AAATATTTGA AGGTTTAGTT
CAAAAGATAA CAGGGGTACC AAATGCTTCT ATAGATTTTG GATACATTGG AAATATAGCA
ATGATTTTAG TAGCTCTATA CTTAGTAAGT TCATTATTTG GGATTATACA ATCTTTTATA
ATGTCAGGAG TTGCTCAAAA GGTTTCTTAT AATTTAAGAA AGCAAATATC AGAAAAAATG
GATACTTTAC CTCTTAATTA TTTTGATACA AGAACAAATG GAGAAGTTTT ATCAAGAATT
ACAAATGACG TTGATACAGT GAACCAAACT TTAAATCAAA GTTTATCACA GATAATAACT
TCAGTGGTTA CTTTAATTGG AGTATTAATA ATGATGTTCT CAATAAGTTG GATTATGACT
TTAGCAACAT TTATAATACT TCCAGTTTCA ATGGTTCTTA TATCTTTAGT TGTTAAGAAA
TCTCAAAAAT ACTTTAAATC TCAACAAGAA TACTTAGGTC ATCTTAATGG TCAAGTAGAA
GAGGTTTATG GTGGACACAA TATAATGAAA GCTTTCAATA GAGAAGAAGC TTCAACTAAA
GACTTTGATG AATTAAATAA CACTTTATAT AAATCAGCTT GGAAATCTCA ATTCTTATCA
GGTATGATGA TGCCAATCAT GTCTTTTGTA GGAAACTTAG GATATGTTTT AGTTTCAATA
CTTGGTGGAT GGTTAACAAT TAAAAGTGTT ATAACAGTTG GGGATATACA AGCATTTATC
CAATATGTAC GTTCATTTAA CCAACCAATA TCTCAAATGG CTCAGGTTGC AAATATAATG
CAATCAACAG CGGCTGCTGC TGAGAGAGTA TTTGAATTCT TAGATGAAGA GGATGAGGTT
AAAGATCCAG TTAATTCAGT AGATCCTTCA GAAATAAGAG GAGAAGTTGA ATTTGAAGAT
GTTCATTTTG GATATAATGA AGATAAGATA ATAATAAATG ATTTCTCAGT AGATGTTAAA
CCAGGGCAAA AGGTGGCTAT TGTTGGACCT ACAGGAGCAG GTAAAACTAC AATAGTTAAA
TTATTAATGA GATTCTACGA TATAAACAGT GGAAGTATTA AGATTGATGG TCATGATATA
AGAGACTTTA AGCGTGCTGA TTTACGTAAC TTATTTGGTA TGGTTCTTCA AGATACATGG
CTATTTAATG GAACTATAAT GGAGAATTTA CGTTATGGAA GACTAGATGC AACAGATGCT
GAAGTTAAAG AAGCTGCTAA GGCTGCCCAT GTTGATCATT TCGTAAAAAC TTTACCAGAT
GGATATAATA TGGTCTTAAA CGAAGAAGCA AGTAATATAT CACAAGGACA AAAGCAGCTT
TTAACAATTG CTAGAGCTTT CTTAAAAGAC CCTAAGCTAT TAATACTTGA TGAGGCTACA
AGTTCAGTTG ATACTCGTAC AGAGCTTTTA ATACAAAAAG CTATGGAAAA ACTTATGGAA
GGAAGAACAA GCTTTATTAT AGCTCACAGA CTTTCTACTA TACGCGATGC AGACTTAATC
CTTGTTATGA AGGATGGAGA TATAGTTGAA CAAGGAAATC ATGAAGAGCT TCTAGAAAAA
GGTGGATTCT ATTCAAGCCT TTACAATAGC CAATTTGAAC AAAGTAGTGC TTCATAA
|
|---|
| Protein sequence | MSKERKGGMG GQMGRMGGGP RAVEKAKDFK GTMKKLGVYL KPYSLSIAIV ILFAIGSAAF
SIVGPKILGK ATTKIFEGLV QKITGVPNAS IDFGYIGNIA MILVALYLVS SLFGIIQSFI
MSGVAQKVSY NLRKQISEKM DTLPLNYFDT RTNGEVLSRI TNDVDTVNQT LNQSLSQIIT
SVVTLIGVLI MMFSISWIMT LATFIILPVS MVLISLVVKK SQKYFKSQQE YLGHLNGQVE
EVYGGHNIMK AFNREEASTK DFDELNNTLY KSAWKSQFLS GMMMPIMSFV GNLGYVLVSI
LGGWLTIKSV ITVGDIQAFI QYVRSFNQPI SQMAQVANIM QSTAAAAERV FEFLDEEDEV
KDPVNSVDPS EIRGEVEFED VHFGYNEDKI IINDFSVDVK PGQKVAIVGP TGAGKTTIVK
LLMRFYDINS GSIKIDGHDI RDFKRADLRN LFGMVLQDTW LFNGTIMENL RYGRLDATDA
EVKEAAKAAH VDHFVKTLPD GYNMVLNEEA SNISQGQKQL LTIARAFLKD PKLLILDEAT
SSVDTRTELL IQKAMEKLME GRTSFIIAHR LSTIRDADLI LVMKDGDIVE QGNHEELLEK
GGFYSSLYNS QFEQSSAS
|
|---|
| |