Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPF_0357 |
Symbol | rumA |
ID | 4201659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Clostridium perfringens ATCC 13124 |
Kingdom | Bacteria |
Replicon accession | NC_008261 |
Strand | + |
Start bp | 427075 |
End bp | 428442 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 638081241 |
Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
Protein accession | YP_694814 |
Protein GI | 110800984 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.820235 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTGAAA AGAATAAAGA ATATATTTTT GATATAATCT CTCAAGGATA TGAGGGTGAA GGAATAGCTA AAATTGATAA TAAATACCCA ATTTTCATTG AGGGAGCTTT AAAGGGCGAA AAAGTTAAAG TAAGAATAGT TAAGGTTAAT AAAAATTTTG CCTATGGAAA ACTTATGGAA GTATTAGAAG CTTCAGAGGA AAGAGTTAAT CCCCCTTGTG CTATTTATAA AAGATGTGGT GGATGTAAAC TTCAGCACGC TTCTTACAAG GCACAATTAG ATTTTAAATG GGATAGAGTT AAGGACTGTG TTAGCAAGAT TGGAAAGTTA GATCCTAGCA TAGTTAAATA TCCTTTAGGA ATGGAAGAGC CTTGGAGATA TAGAAATAAG GTTCAGTTAC CAATAGGGTT AATTAATGGA GAGGTTAAAA TAGGATTCTT TGCTCCAAGA AGTCATGATA TTATCGACAT GGAATCTTGC TTAATTCAAG ATGAAATAGG AGATAAGGTT GTTAAACTTA CTAGAGAGTG GATAGAGAAA TTTAATATAA GACCATATAA TGTAGATGGT GAGTATGATG AAAAGGGAAT AGTAAGACAC ATAATGATAA GAAGAGGTTT TACAACTAAT GAGGTTATGG TTGTCTTAGT TACAAATGGA GAAAAACTTC CTCATAAAGA AGAGTTTGTA GACTTAATGG TTAAAAATAT TCCTGGAATA AAGAGTGTTA TACAAAATAT AAACTCAAAG AAAACTAATG TAATATTAGG TTTAGAAAGT AAAACTCTAT GGGGAGAAGA TACAATATCA GATTACATAG GAGACTTTAG ATTCAACATA TCTCCATTAT CATTCTTCCA AGTAAATCCT ACTCAAACAG AGGTTTTATA TGGTAAGGCT TTAGAATATG CAAATCTTAC AGGAAATGAA GAGGTATTTG ATGCATACTG TGGAACAGGA ACAATAACAT TATTCCTATC ACAAAAGGCT AAAAAAGTTT ATGGAGTAGA AATAATTCCA CAGGCCATAG ATAACGCTTG GATAAATGCA AAGGAAAATA AAGTAGAGAA TGTAGAATTC TTCGTTGGAG AATCAGAAGT GGTGATTCCA GACTTAATAA ATAAGGGAGT AAAAGCTGAT GTGGTAGTAG TAGATCCACC AAGAAAAGGA TGCGATAAAA AATTACTAGA TGCCATAACA AATATAAATG CTAAAAAAAT AGTATATGTA AGCTGTGATC CAAGTACCTT AGGAAGAGAT CTAGCAATAT TAGAAGAGAA TGGCTATAAA ACTTTAGAAG TTCAACCAGT GGATATGTTT CCTAATACAT CTCACGTAGA AAATGTAGCT AAGTTAATAA AAAAATAA
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Protein sequence | MVEKNKEYIF DIISQGYEGE GIAKIDNKYP IFIEGALKGE KVKVRIVKVN KNFAYGKLME VLEASEERVN PPCAIYKRCG GCKLQHASYK AQLDFKWDRV KDCVSKIGKL DPSIVKYPLG MEEPWRYRNK VQLPIGLING EVKIGFFAPR SHDIIDMESC LIQDEIGDKV VKLTREWIEK FNIRPYNVDG EYDEKGIVRH IMIRRGFTTN EVMVVLVTNG EKLPHKEEFV DLMVKNIPGI KSVIQNINSK KTNVILGLES KTLWGEDTIS DYIGDFRFNI SPLSFFQVNP TQTEVLYGKA LEYANLTGNE EVFDAYCGTG TITLFLSQKA KKVYGVEIIP QAIDNAWINA KENKVENVEF FVGESEVVIP DLINKGVKAD VVVVDPPRKG CDKKLLDAIT NINAKKIVYV SCDPSTLGRD LAILEENGYK TLEVQPVDMF PNTSHVENVA KLIKK
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