| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0323 |
|---|
| Symbol | |
|---|
| ID | 4202903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 384584 |
|---|
| End bp | 385969 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 638081210 |
|---|
| Product | TldD/PmbA family protein |
|---|
| Protein accession | YP_694783 |
|---|
| Protein GI | 110800551 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAGTA AAGATACTAT TAAAAAAGTA CTTTCTGTAG CTCTTAGTGC AGGAGGAGAC
TTTGCAGAAG TTTTTGTTGA AGAAAAGTTA AATAATAATA TTGTATTAAC TTCAGGGGCT
GTTAAGGATA TTATTTCAGG AAAAGATTAT GGAATTGGTA TAAGAATTTT TAAAGGGCTA
AAGTGCATAT ATGCATATAC CAATGACGAT TCCATTATGA GTTTAGTTAA TACTGCTAAA
AAGGCGGCTT TAGCTTTAGG GGACGTTATA GATGGACATA CAGTTAATTT AAATTTAGTT
GAAAGAATAA ATACCAATAT TCATCCTATT TTATATGTTC CTTCATCTAT AAGTTCAGCT
AAGAAAATTG AGAAAATGAA GGAAGCTTAT AAGGGGGCAA AGGGATATAG TCATGAGATA
GCTCAAGTTA CAGTTACTAT GAAGGATGAG GATCAAAGGG TTTTAATTGC TAATAGTGAA
GGATTATTTA CTGAAGATAG AAGAATAAGA TCAAGAATAG CCATAAGTTC CATAGCTTCA
AATGGAGTAG ATAATCAAGC CGGAACAAGA TCTCCAGGGG CATCTATGGG ATTTGAGTTT
TTTGATACTA TAGATTTAAG TGATTTAGGA AAAGAAGCCT CTAAGTCAGC AGTAACAATG
CTTCATGCAG ATTATTGCCC AGCGGGTAAG ATGACTGTGG CTATTGAAAA TTCATTTGGC
GGGGTTATAT TCCATGAAGC TTGTGGTCAT TCTCTTGAGG CAACTGCTGT TGCTAAAGGA
AATTCTATAT TCTGTGATAA ACTTGGCATG CAAATAGCTT CTAAAAAGGT TACTGCAATA
GATGATGGAA CTATAGCTAA TGCATGGGGT TCATTAAATA TAGATGATGA GGGAGAACCA
ACTAGAAGAA AAGTTTTAAT AGAAAATGGA ATACTTAAAT CATATATGAT TGATAAGTTT
AATGGAAGAA GAATGGGTAT GCCTTCTACA GGAAGTGGAA GAAGAGAATC TTATAAATAT
GCTCCTACTT CAAGAATGAC AAATACCTTT ATAGCAAATG GTGAAGATGA TAATGAGGAA
ATTATAAAAT CTATAGAAAA TGGATTATAT GCTAAGCAAA TGGGTGGAGG ATCAGTAAAT
CCTATAACTG GCGATTTTAA TTTTAACGTT CTTGAAGGAT ACTTAGTTAA AAATGGAGTG
ATTGATAGGG CTGTAAGAGG AGCTAGTCTA ATAGGAAATG GTGCTGATAT CTTAATGAAC
ATAGATATGG TTGGAAAAAA CTTAGATCAT GGGCAAGGAG TTTGTGGTTC CTTAAGTGGA
GCAGTCCCAA CTAACGTAGG TCAGCCACTT TTAAGAGTTA AAGAAATCAC AGTTGGGGGA
AGATAG
|
|---|
| Protein sequence | MLSKDTIKKV LSVALSAGGD FAEVFVEEKL NNNIVLTSGA VKDIISGKDY GIGIRIFKGL
KCIYAYTNDD SIMSLVNTAK KAALALGDVI DGHTVNLNLV ERINTNIHPI LYVPSSISSA
KKIEKMKEAY KGAKGYSHEI AQVTVTMKDE DQRVLIANSE GLFTEDRRIR SRIAISSIAS
NGVDNQAGTR SPGASMGFEF FDTIDLSDLG KEASKSAVTM LHADYCPAGK MTVAIENSFG
GVIFHEACGH SLEATAVAKG NSIFCDKLGM QIASKKVTAI DDGTIANAWG SLNIDDEGEP
TRRKVLIENG ILKSYMIDKF NGRRMGMPST GSGRRESYKY APTSRMTNTF IANGEDDNEE
IIKSIENGLY AKQMGGGSVN PITGDFNFNV LEGYLVKNGV IDRAVRGASL IGNGADILMN
IDMVGKNLDH GQGVCGSLSG AVPTNVGQPL LRVKEITVGG R
|
|---|
| |