| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0238 |
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| Symbol | |
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| ID | 4202033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Clostridium perfringens ATCC 13124 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008261 |
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| Strand | - |
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| Start bp | 287113 |
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| End bp | 289440 |
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| Gene Length | 2328 bp |
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| Protein Length | 775 aa |
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| Translation table | 11 |
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| GC content | 25% |
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| IMG OID | 638081122 |
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| Product | GGDEF/EAL domain-containing protein |
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| Protein accession | YP_694700 |
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| Protein GI | 110800404 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000652634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCATA GACCTATGCT CAATAAGATA AAACTTTTTT TTATAGTTCA AATTATATTA
AGTTTTTTAG TTTTGGCAGG AACATTAATT TCTATATTGG TAATACCATC ACACTTACCA
GACTACTTTA TATGGGCCAT AGCCTTTTCA TTTTGGGTTT TTCAATGTGG CTTTAGTACA
ATCTTTGCAT TTAGATATAG AATTTCTAAA AGTTCTCTAA GCACCATAAA ATTAAGCTTT
ATATTAATTG GAAGCATACA AATTTTAATA ACCTTAGCAA CAAACTTGTT TGGTATATTT
GACCTTCCAA TTTTTAATAC ACTAATAATA AAAAACTTTC AATTTTTAAT ATTATCATTG
ATATTTATTG TAATGATTTA TAAACTTATA AAAGATATGC TTAAGTATAG GGTTTTAAAG
GATTATATTA TTCGTGATTC ATTTTTTACC TTTATACCTT TTGCTTTTAT TATTTATAAA
AATTCTAAAT ACTTTATATC CTCAATATAT TTCTTAGATG ATTCAGTATA TAGTTTGGCT
CTATTAAATA TAAACAGCTT AAGGATTTTT TTAGAAGGAT TTCTTATTAT ATTGATCTTT
GTAAAAACTA TTTATTTAAG AGGAAATAAA AAGAGTAGTT TTCTATTATT AATCTACTTT
TATGTTTCAA ATCTTAACTG CTATATAGTC TCATATTTTA ATAGTAAGTT GCTTTTTTCT
CATTACTTAT ATCAAGGTAT TGGAATCTAC TTTATATGTC CAATATTATT AATGCTTTCT
ATATATCATT CAATTACAGA ACAAGAAAAA GCTCCAGATC AAGTGCTATT TGATGATTCC
TATATGAATA TAAATAACTC ATGGATAAGT ATTACTATTG GAATTTTCCC AGTATCCTTT
TCGGCTATAG ATATAATTTC ATCTTCTATA GCAAGTGGTG ATTTTAACGG CATAGAAAGC
TTAGTAATTA TACTTCTTGT TATGATTTTA CTAGTATGTA GAGATGTTAT ATTAAGAAAA
GATAATCTAA GATTAATTGC AAGTGTTAAG AGGGCTAATG AAATAGACTT TTTAACTAAT
ATGTATAGTA GAAATTATTT TTTAAAGAAA CTTGAAACCA TAAATACTGA TTATGCACTT
TTCTTTATAG ATATAAAGAG CTTTAAGGAC ATTAATAATA TTTTTGGACA TGTTGTTGGT
GATAAGGTAT TAGTAGAAGT TGCAAATAAA TTTAAAGAAC TTAAACTACT TCTAGGTAAA
AATGTTTTCT ACTGTAGATA TAGCGGAAAT GAATTTGCCT TAATCTCTAA ATTAGATCAA
GTTGATCTTA TATTAAAATT TTTTAGAGAC CTTGAAAATA TAAAAATTCA ACATAACTCT
GATTTAATAC ATATAAACTT TAATATTGGA TATTCATTAA ATGATTCAAA TATTAACTTA
GACTTACTAA TTCAAGAAAC AGATTATGCT CTAATGAGAG CTAAGAAGCT TAAAGGTCCT
AATAACTCTA TACTTATGTA TGATGATAAT TTAAAAACTG ATTTAGAACA TATGAATATA
TTAAAAAAGG ATTTTAAAAA TGATCTTTTA ACAGGTAAGT TTCATTTAGT CTTCCAACCT
AAAGTTTGCG TAAAAACATT AAAAATAGTT GGTTTTGAAA CTCTACTTCG TTGGAAACAT
GATAAACTAG GTGAAATTTC TCCTTCTAAG TTTGTACCTA TAGCTGAAAA CTTAGGTGAA
ATTTCTTCCC TTGACTTATA TGTTTTTAAA AAGTCCTGTG AATTTCAAAG ATGCTTAATA
GATAAAGGAA TAAAATTAAA GTGCAGTGTA AATTTATCCT TAAACACTTT AAAATCCTAT
GAAAAAATCA ATGAAATTCT AAATATTTAT AAAGAATATA AAATTCCAAA ACATTTAATA
ACAGCAGAAA TATTAGAAAA TGTATCACTA AATAATAATG CTAAAACAAT CTCTTATATT
AATCTTCTTA GAGAAAATGG AATTTGTATA TCCATAGATG ACTTTGGTAC AGGCTATTCT
TCTCTTAGCC AAATATCTAA TCTGTATTTT GATGAATTAA AGATTCCAAG AGAGTTTGTA
ATAGATGCAA GAACCCCTAG TAAATTAGCT GTTATTGAAG CAATATCTAT ATTAGCCAAA
AAATTAAAGG TAACCTCTGT TATTGAAGGG GTAGAAAATT ATGAAGACTT TAAATTATTT
AGTAGTTTAG GATTTGATAT TGTTCAAGGA TATTATTTCT CTAAACCCTT AACTAAATCT
GAAATAATAG ATTATATAAA AGTTAATATT AATAACAAAA TAAGCTAG
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| Protein sequence | MTHRPMLNKI KLFFIVQIIL SFLVLAGTLI SILVIPSHLP DYFIWAIAFS FWVFQCGFST
IFAFRYRISK SSLSTIKLSF ILIGSIQILI TLATNLFGIF DLPIFNTLII KNFQFLILSL
IFIVMIYKLI KDMLKYRVLK DYIIRDSFFT FIPFAFIIYK NSKYFISSIY FLDDSVYSLA
LLNINSLRIF LEGFLIILIF VKTIYLRGNK KSSFLLLIYF YVSNLNCYIV SYFNSKLLFS
HYLYQGIGIY FICPILLMLS IYHSITEQEK APDQVLFDDS YMNINNSWIS ITIGIFPVSF
SAIDIISSSI ASGDFNGIES LVIILLVMIL LVCRDVILRK DNLRLIASVK RANEIDFLTN
MYSRNYFLKK LETINTDYAL FFIDIKSFKD INNIFGHVVG DKVLVEVANK FKELKLLLGK
NVFYCRYSGN EFALISKLDQ VDLILKFFRD LENIKIQHNS DLIHINFNIG YSLNDSNINL
DLLIQETDYA LMRAKKLKGP NNSILMYDDN LKTDLEHMNI LKKDFKNDLL TGKFHLVFQP
KVCVKTLKIV GFETLLRWKH DKLGEISPSK FVPIAENLGE ISSLDLYVFK KSCEFQRCLI
DKGIKLKCSV NLSLNTLKSY EKINEILNIY KEYKIPKHLI TAEILENVSL NNNAKTISYI
NLLRENGICI SIDDFGTGYS SLSQISNLYF DELKIPREFV IDARTPSKLA VIEAISILAK
KLKVTSVIEG VENYEDFKLF SSLGFDIVQG YYFSKPLTKS EIIDYIKVNI NNKIS
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