| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0198 |
|---|
| Symbol | |
|---|
| ID | 4203663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | - |
|---|
| Start bp | 240450 |
|---|
| End bp | 242825 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 24% |
|---|
| IMG OID | 638081082 |
|---|
| Product | sensory box histidine kinase |
|---|
| Protein accession | YP_694661 |
|---|
| Protein GI | 110799765 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00155091 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAACC CAATATTTTT TCATATTTTT AATGATGATA AAAATAAATT AGAAACTCAA
AGAATAATAA AACTATCCAT TTTTATAGTT TTCTCTATAT TTTTTATATT GCTAATAGAT
TTATCCTATA AAGTGCTTAT TAGAAAAAAT ATAGAGTTTA TTCCTGGTAA TTCTATGCCA
AGTTTCTCAT TAAGTTTATC ATTAATATTA GGAACAATGG CATACATAAG TTCATTAATA
TACTATTCAA GCACCAAAAA AGATGATTTT TTTATAATCT CTTTAATATA TATGAATTTA
TCTGTAGAAC TTTTAATTAC TAAAGGACAT AACCTAATAA TATTCGATAA GTTTATTTTT
ATACACGCAA TATTTAGGAT AATTTTGCTT TTTTATGTTG CCTTTAATAA GAAAGGAATA
TCCCCTCTTA TTACTAAACA TAAAATAATT ACATCAATAG TAGTTTTTTT ATTTTCAGTT
ATAACACCTA TGATTAACTA TAGAATTTTT TCTAACAATT TATTTGCTAA AGATATTTAT
TTTTATGCTA CTTTAATGAC TATGATTATT ATCCTATACA TAATCGCTTG CATATTCTTA
TCAAAGAAAT CTTTAGATGA TTGTGAGTTA ATATATTCAT TTATAATTGC TAGTATTCTT
TTAATAGCCC TTAGAGGATT ATATTGGATT TGTGAAGTAC TTCTTCCAAA TATAACACTT
TTAAAAACCA ATAATGTTGT TCTTCTACTT ACCATACTAT CATTTTTATT GGCTATAAGT
GGAGTTTTTA ATGAAATTAC AGCTAAAAAC AAAAGAAGCT CTTTACTACA AAATGAACTT
CAAGTTTTTT ATCACTTAGT TGAATTTAAT ACTAGTAGTT CTATAATTTT ATATGATAAT
AAAAAGAAGG TTATATATAC AAACAAGACA ATAAGAGAAC GCTACTGCAA ATCAACTAAA
TTAAAAGATC AACTTAAAGA GGTAGAAAAA TTATTTGTAG ATTCGATTTT TATAGATGAC
TCTGAAAAAA ATGCTACTAA AGCACTTTTT AATAAGGGCA ACTGGGAAGG TAAGCTTATT
TTAAAAAATG GCAAAATAGT AAGTGCCTAC ATACAGATAT TAAATGTTGA AAATAAAAAT
TATTTTGCTG TAAATTTAAA AGATATAACC GAAGAATATA CCCTAACAAA AAATATTAAA
AGAAATGAAC AATTATTAAG TTGTATAAAT AATAACGTAC AGGATTTAAT AATAAGTGTT
GATAATAATG GTTTAATTAC ATATGTTAAT GATTCTGTAT TAAAAACATT AAATTATACC
TATGAAGAAA TTATAGGAAT GCCTATAATA AACCTTTTAG GTAAAAATGA TGAGATATTA
AATCAATTAA AACTAGAAGA TGAGGAAGAT AGTATTAAAT GTAAACTTGT TGGTAAACAT
TCCTTTGTAT ATGTAGAATC TATAATTAGA ACTTTAAATG ATAATAATGA AATTCCTTAT
GGAAAAGTTA TAGTTGCAAA AAACTTAACC TCTAAAAAAC GTCTTGAAAA TTTAGCTATA
AAATTTAAAG AAGCTAAGGC TTATGAACAA ATAAGAAATG AATTTTTCGC CAATATATCA
CATGAGCTTA GAACACCACT TAATATTATC TATTCTACAA TACAGTTATT AAATTCTAAG
CATGAAACTG ACCCTATGGA CTTTAATAAC TTCTATGATA AATATAAGCA AGGTCTTAAG
ATAAATTGTT ATAGAATGCT TAGACTTATA AATAACCTTA TTGATGTTAG TAAAATTGAA
GTTGGATTTT TAAAAGCTGA TTTTACTAAT AGAGATATAG TATTCCTTGT AGAAAATATA
GTATCTTTGG TTATTCCTCA TTCTGAAAAT AAGGATATTA ATATAATCTT TGATACTAAT
GTTGAAGAAA ACATAATAAA ATGTGATCCT GTAAAAATTG AAAGATTAAT TCTTAACTTA
CTTTCAAACG CAATAAAATT CACCCAAAAT CATGGTGAAA TATTTGTAGA TTTAAACATC
TCAAAGGATT GGGTTAAAAT AAGCATAAAA GATAATGGAA TTGGTATTCC CAAAGAAATG
CAAGCATCAA TTTTTGATAG ATTTGTACAA GCTGATAAAT CCTTAAAAAG AAGAAATGAA
GGTAGTGGAA TAGGTCTTAG CATTGTAAAG TCTATTGCAG AACTGCATGA TGGTAAAATT
GAACTTATAA GTGATGGAAT AAAAGGTTCA GAATTTATAG TATGGCTACC AAATGTAAAA
TTAAATTACA CAGAAGAAAG CAATAATTTA GTTGATTATA TAACAGATGA TAAAAATATA
GAGTTAGAGC TTTCTGATAT TTATGAAGTA CATTAA
|
|---|
| Protein sequence | MDNPIFFHIF NDDKNKLETQ RIIKLSIFIV FSIFFILLID LSYKVLIRKN IEFIPGNSMP
SFSLSLSLIL GTMAYISSLI YYSSTKKDDF FIISLIYMNL SVELLITKGH NLIIFDKFIF
IHAIFRIILL FYVAFNKKGI SPLITKHKII TSIVVFLFSV ITPMINYRIF SNNLFAKDIY
FYATLMTMII ILYIIACIFL SKKSLDDCEL IYSFIIASIL LIALRGLYWI CEVLLPNITL
LKTNNVVLLL TILSFLLAIS GVFNEITAKN KRSSLLQNEL QVFYHLVEFN TSSSIILYDN
KKKVIYTNKT IRERYCKSTK LKDQLKEVEK LFVDSIFIDD SEKNATKALF NKGNWEGKLI
LKNGKIVSAY IQILNVENKN YFAVNLKDIT EEYTLTKNIK RNEQLLSCIN NNVQDLIISV
DNNGLITYVN DSVLKTLNYT YEEIIGMPII NLLGKNDEIL NQLKLEDEED SIKCKLVGKH
SFVYVESIIR TLNDNNEIPY GKVIVAKNLT SKKRLENLAI KFKEAKAYEQ IRNEFFANIS
HELRTPLNII YSTIQLLNSK HETDPMDFNN FYDKYKQGLK INCYRMLRLI NNLIDVSKIE
VGFLKADFTN RDIVFLVENI VSLVIPHSEN KDINIIFDTN VEENIIKCDP VKIERLILNL
LSNAIKFTQN HGEIFVDLNI SKDWVKISIK DNGIGIPKEM QASIFDRFVQ ADKSLKRRNE
GSGIGLSIVK SIAELHDGKI ELISDGIKGS EFIVWLPNVK LNYTEESNNL VDYITDDKNI
ELELSDIYEV H
|
|---|
| |