| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0182 |
|---|
| Symbol | |
|---|
| ID | 4202018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 216162 |
|---|
| End bp | 217001 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 638081063 |
|---|
| Product | RpiR family transcriptional regulator |
|---|
| Protein accession | YP_694646 |
|---|
| Protein GI | 110800351 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATAT TAGAACAATT AGAAAATCCA AAATTTAAAG CAACTAAGTC AGAAAAGACA
TTAATTGAAT ATATAAAGTC AGATTTAGAC AATATTATAT ACAAATCAAT ATCTATAATA
GCTAAGGAAT CAGGAGTAGG AGAAGCTACC ATAACAAGGT TTACTAAGAA GTTGGGGTTT
AATGGATTCC AAGACTTTAA AGTTACTTTA GCAAAAGAGA TTTCAAACAA AAAAAATACA
AGTATTATAA ACTTGCATGT TCATAGGGAT GAGAGTGTAA CAGAAACTGC AAATAAGATG
TTAAAATCAT CTATTAATAT ATTAGAGCAA ACAGTTAAGC AGATTGATTT AGATTTAATG
TGCAAATGCA GAGATTTAAT AATGAATGCT AAGAGAGTTT ATTTCATAGG TATAGGTTAT
TCAGGAATAG CTGCCACAGA TATAAACTAT AAATTCATGA GAATTGGATT TACAACAGTA
CCAGTAACTG ATAGCCATAC GATGGTTATT ATGTCATCTA TAACAAATGA TGATGATGTA
ATAGTTGCTA TTTCAAACTC AGGTACTACT AAAGAAGTAA TAAAAACTGT AAAACAAGCT
AAAGAAAATG GTACAAAGAT AATAACTTTA ACAGAAGATA GTGATAATCC ATTAAGAAAG
TTATCTGATT ATGAATTGAC ATATACATCA GCTGAGACAA TCTTTGAGAC AGGATCAATA
TCATCAAAAA TACCACAAAT ATTTTTATTA GATTTATTAT ATACAGAGGT AATTAAAGAA
ATGTTTAGTG AAGCTGTTGA AAAGAAAATC AAGACTACTA GTGCAATTCT TAATGATTAA
|
|---|
| Protein sequence | MGILEQLENP KFKATKSEKT LIEYIKSDLD NIIYKSISII AKESGVGEAT ITRFTKKLGF
NGFQDFKVTL AKEISNKKNT SIINLHVHRD ESVTETANKM LKSSINILEQ TVKQIDLDLM
CKCRDLIMNA KRVYFIGIGY SGIAATDINY KFMRIGFTTV PVTDSHTMVI MSSITNDDDV
IVAISNSGTT KEVIKTVKQA KENGTKIITL TEDSDNPLRK LSDYELTYTS AETIFETGSI
SSKIPQIFLL DLLYTEVIKE MFSEAVEKKI KTTSAILND
|
|---|
| |