| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPF_0096 |
|---|
| Symbol | |
|---|
| ID | 4201115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Clostridium perfringens ATCC 13124 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008261 |
|---|
| Strand | + |
|---|
| Start bp | 115780 |
|---|
| End bp | 117213 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 638080977 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_694560 |
|---|
| Protein GI | 110798992 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACATG TAATAAAAAA GGGCGAAAAT GCACAAGAGG TTAAATATAA TAAATGGGCT
ATATTATTTT GTGTAGTTAC TATGACCTTC ATGTCTTGCA TAGATGGTAG CATAGTAAAT
GTAGCTTTGC CTAAAATTTC ATATGATTTA AATAAGCCTA TATTAGATAC TCAATGGATT
GTAACTACTT ATCTTATGGT TATATCAGCC TTAGTATTAC TTTGTGGAAG AATTGGTGAC
ATAAAGGGTA AATGTAAGGT TTTTAAAGTC GGCGTTTTAA TTTTTACAAT AGGTTCATTC
TTTAGTGGGT TATCAAAGAC ATTGCCTCTT CTTATAGTGT CTAGAGCAAT TCAAGGGGTT
GGAGGCTCCT GTGCAATGGC AACTGGTATG GGAATAATAA CAGCTTTCTT TAATGAAAAA
GAGAGAGGAA AGGCAATGGG GTTATCAGCT AGTGCAGTAG CTATGGGAGT AATGGTTGGA
CCTGCATTAG GTGGTATTTT AGTCTCTATA AGATGGGATC TTATATTTTG GATTAATGTA
CCTATTGGAA TAATTGCTTT TTTACTTTCA ATGGTTTATC TTCCTAAGAT GGAGACAAAT
TCAAAGGAAA AGATAGATAT AAGAGGAACA ATAGTATTTG CAATATTTAT AGTATCAAGC
ATGTTATCTA TAACAAAAGG GGAAGTTTTA GGTTATACAG ATAAATATAT AATGTTAGGA
TTTATAGTAT CTATAGTTTC TTTTACAGTA TTTATATATT TGCAAAAGAC AGTGGAATCA
CCAGTTTTAG ATTTAAATTT ATTTAAGACT AAACTATTTT CTCTAAGTAT AGTGTGTTCA
GCACTTTCAT TTTTAGCTAT AAGCAGCATG AATATAATAA TTCCACTTTA TTTAGAACAA
GCATTACAAA TGAGTTCTTT ACATGCAGGA TTATTTTTAA TGATTTACCC ACTATGTCTA
TCAATAGTTG CTCCACTTAG TAGTTCTCTT TCTGATAGAT TTAATGGAAG ATTGATTTCA
TTAATAGGAA TATCTTTATT AACAGTAGCT CTTTTCTTTA TGGGAAGAAT AAATATAAAT
AGTACTTTAA TTTATTTAGG AACTTGCTGT GCTATTATGG GGGTTGGCAA TGGAATATTT
AAATCAACAA ACAACGCTCT TGTTATGGAA AAAGTGCCTA AGCATAGACT AGGTATTGCA
GGAAGTGTTA ACTCATTAGT TTCAAATTTA GCTATGGCCT ATGGGTTTAC ATTTGCAACA
ACAATCTTAT ATGGAAGAAT GAGTTATAGA CTAGGGTATA AGGTCACAAA TTATATACCA
GGCCATGAAG AGGCATTTTT ATATGGATTA GATTGTGTAT TTTTTTCAGC TACAATAATG
TGTTTAATCG CATCAGTAGT AGCATTTATT AGATATAGAA GAAAAGATAT ATAG
|
|---|
| Protein sequence | MEHVIKKGEN AQEVKYNKWA ILFCVVTMTF MSCIDGSIVN VALPKISYDL NKPILDTQWI
VTTYLMVISA LVLLCGRIGD IKGKCKVFKV GVLIFTIGSF FSGLSKTLPL LIVSRAIQGV
GGSCAMATGM GIITAFFNEK ERGKAMGLSA SAVAMGVMVG PALGGILVSI RWDLIFWINV
PIGIIAFLLS MVYLPKMETN SKEKIDIRGT IVFAIFIVSS MLSITKGEVL GYTDKYIMLG
FIVSIVSFTV FIYLQKTVES PVLDLNLFKT KLFSLSIVCS ALSFLAISSM NIIIPLYLEQ
ALQMSSLHAG LFLMIYPLCL SIVAPLSSSL SDRFNGRLIS LIGISLLTVA LFFMGRININ
STLIYLGTCC AIMGVGNGIF KSTNNALVME KVPKHRLGIA GSVNSLVSNL AMAYGFTFAT
TILYGRMSYR LGYKVTNYIP GHEEAFLYGL DCVFFSATIM CLIASVVAFI RYRRKDI
|
|---|
| |