Gene CPF_0046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPF_0046 
Symbol 
ID4201943 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameClostridium perfringens ATCC 13124 
KingdomBacteria 
Replicon accessionNC_008261 
Strand+ 
Start bp52186 
End bp52905 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content25% 
IMG OID638080921 
Producthypothetical protein 
Protein accessionYP_694513 
Protein GI110801031 
COG category[S] Function unknown 
COG ID[COG3689] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.142914 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAAAT TTAATTTTAG TGAATTCATA TGGTTTCTTA TATTATTTTG CTTTGAATAT 
TTAATAATAA AAATGTTTAT GAGTGAAAAG ATTTTTTTGA TTATATCAAG AGATATGAAG 
GCATATGTAA TTTTGGCCAT AATATTATTA TTTTTGATTT TAGTTATACA ATTTTTCAAT 
ATTTTTAAAA CCTCAACTAG AAGGAGTTTT AAGGGTGGAT ATTTAATTTT TATTTTTGCT 
TTAGTTATTT TAAATATAGC CAATGGATTA AATATTAATC AGGTCTCCTT AAACTTAAAA 
GGGGTTAAGT TATATCATGA TAGACATAAA GAGAGTGAAC ATAATCACCT GCACTCTAAT 
GAAAAATTAA ATAGTAATGA AGCTTTAGTA TTTACAGAGA AAAATTTTCA TAGTTCCTTA 
GAAGAATTAA TACTTCATCT AGAAGATTTT GTAGGAAAAG AAATTTCTAT AGAAGGGCTT 
TTATATGTTA GTGAATTATA TGAAAAAGAA GAATTTGCAA TTACTCAAAT AGATATGACT 
TGCTGCATAG CTGATTCAGT GTACTTAGGA GTATTATGCA AGGGCGATTT GCCAGATTTA 
AAAAATGGAA GTGAAATAAA AGTTAAGGGA TTAGTTGAAT CTAAAAAGAT TAAAAATAGT 
GCAGGAGAAG AAATTGAAAT TCCATTTATA AATGTATTTT ACACAGATAC ATTACAGTAA
 
Protein sequence
MRKFNFSEFI WFLILFCFEY LIIKMFMSEK IFLIISRDMK AYVILAIILL FLILVIQFFN 
IFKTSTRRSF KGGYLIFIFA LVILNIANGL NINQVSLNLK GVKLYHDRHK ESEHNHLHSN 
EKLNSNEALV FTEKNFHSSL EELILHLEDF VGKEISIEGL LYVSELYEKE EFAITQIDMT 
CCIADSVYLG VLCKGDLPDL KNGSEIKVKG LVESKKIKNS AGEEIEIPFI NVFYTDTLQ