Gene CPF_0006 details

Gene Information

• Locus tag: CPF_0006
• Symbol: gyrB
• ID: 4202552
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Clostridium perfringens ATCC 13124
• Kingdom: Bacteria
• Replicon accession: NC_008261
• Strand: +
• Start bp: 5163
• End bp: 7079
• Gene Length: 1917 bp
• Protein Length: 638 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 638080878
• Product: DNA gyrase subunit B
• Protein accession: YP_694481
• Protein GI: 110799437
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01059] DNA gyrase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTGGAGC AAAACAATCA AAATTATGAT GCAAGTCAGA TTCAAGTCTT AGAGGGACTA 
GAAGCTGTAA GAAAAAGACC AGGAATGTAC ATTGGTAGTA CTAGTTCAAG AGGTCTTCAT 
CATTTAGTTT ACGAAATTGT TGATAACAGT ATTGATGAAG CATTAGCTGG ATACTGTAAA 
AATATAAAAG TATACATACA CAAGGATAAT TCAGTTACTG TAGTTGATGA CGGAAGAGGT 
ATGCCAGTAG GAATTCATCC AAAGATGGGA AAACCAACTG TAGAAGTTAT AATGACAGTT 
CTACATGCTG GAGGTAAATT CGGAGGCGGC GGATACAAAG TATCTGGTGG ATTACATGGT 
GTTGGTGCAT CTGTAGTTAA TGCTCTTTCA GAATTATGCG AAGTAATTGT AACAAGAGAT 
GGATATGTTT GGAAACAGTC TTATAAAAGA GGGGCTGTGC TTACAGGTTT AGAGAAAATA 
GGAGAAGCTG AAGGTAGTGG AACTAAAGTT CACTTTAAGC CTGACCATGA AATATTCGAA 
GAAACTGAAT ATGATTTTGA AATTTTATCA CAAAGACTTA GAGAATTAGC TTTCTTAAAT 
AAGGGAATAA ACATAACTCT TATTGATGAA AGAGAAGATG AAGTTAAAGA AGAAGTATAT 
CACTATGAAG GTGGTATAAA ATCTTTTGTA AGTTATCTAA ATAGAAATAA AGAGGTTTTA 
CATGATGAAC CAATTTATGT AGAAGGTCTT AAAGATGGAA TTGCTGTAGA GGTTTCTTTA 
CAATACCATG ATGGTTTCAA TGAAAATATC TTTACTTTTG CTAATAATAT AGACACTGTT 
GAAGGTGGTA CTCACTTAGC AGGATTTAAA ACTGCTTTAA CAAGAGTAAT GAATGATTAT 
GGTAGAAGAT TTGGTCACTT AAAGGAATCA GATAAGAATT TATCAGGAGA TGACATAAGA 
GAAGGTTTAA CTGCTGTTGT TTCTGTTAAA ATATCTGAGC CTCAATTTGA AGGTCAAACT 
AAAACTAAAT TAGGAAATAG TGAAGTTAGA AGTGCTGTTG ATTCAATTTC AGGAGAAGGA 
ATTTCTACTT TCTTAGAAGA AAATCCTGAG GTTGGTAAAA TTATAATAGA AAAAGCTTTA 
TTAGCATCAA GAGCTAGAGA AGCTGCAAGA AGAGCTAGAG AACTTACAAG AAAATCAGTA 
CTTGAAAGAA GTTCATTACC AGGTAAACTT GCTGATTGTT CATCAAAAGA TCCAAAGGAA 
TGTGAAATTT ACATAGTTGA GGGAGACTCA GCTGGTGGAT CTGCAAAGCA AGGAAGAGAT 
AGAAAATTCC AAGCTATATT ACCTTTAAGA GGTAAAATAA TGAACGTAGA AAAGCAAAGA 
TTGGATAAAA TCTTAGGTTC AGATACTATA AGATCAATGG TAACTGCAAT TGGAGCTGGT 
ATAGGACCTG AGTTTGATAT AGAAAAAATA AGATATAATA GAATAATAAT CATGACTGAT 
GCTGACGTTG ATGGTGCTCA CATAAGAACT CTATTATTAA CATTCTTCTA TAGATATATG 
AGAGACTTAG TTGAGCAAGG ACACGTTTAT ATAGCGCAAC CACCACTATA TAAAATTTCT 
AAAGGAAAAC AAGAGAGATA TGCATACTCA GATGCTGCTG CAGATGAAAT AATAGAAGAG 
TTTGGTGGAA AGGATAGTAG TGTAAATGTT CAAAGATACA AAGGTCTTGG AGAAATGAAC 
GCAGGACAAC TTTGGGAAAC TACTATGGAT CCAGAATCAA GAATATTATT AAGAGCAGAT 
ATTGAGGATG CTATGGTAGC TGATGAGATA TTTACAATTC TTATGGGCGA TAAAGTAGAG 
CCAAGAAGAG AATTTATTCA GAAGAATGCT AAAAATGTTA GCAATTTAGA TATATAG 

 

Protein sequence

MLEQNNQNYD ASQIQVLEGL EAVRKRPGMY IGSTSSRGLH HLVYEIVDNS IDEALAGYCK 
NIKVYIHKDN SVTVVDDGRG MPVGIHPKMG KPTVEVIMTV LHAGGKFGGG GYKVSGGLHG 
VGASVVNALS ELCEVIVTRD GYVWKQSYKR GAVLTGLEKI GEAEGSGTKV HFKPDHEIFE 
ETEYDFEILS QRLRELAFLN KGINITLIDE REDEVKEEVY HYEGGIKSFV SYLNRNKEVL 
HDEPIYVEGL KDGIAVEVSL QYHDGFNENI FTFANNIDTV EGGTHLAGFK TALTRVMNDY 
GRRFGHLKES DKNLSGDDIR EGLTAVVSVK ISEPQFEGQT KTKLGNSEVR SAVDSISGEG 
ISTFLEENPE VGKIIIEKAL LASRAREAAR RARELTRKSV LERSSLPGKL ADCSSKDPKE 
CEIYIVEGDS AGGSAKQGRD RKFQAILPLR GKIMNVEKQR LDKILGSDTI RSMVTAIGAG 
IGPEFDIEKI RYNRIIIMTD ADVDGAHIRT LLLTFFYRYM RDLVEQGHVY IAQPPLYKIS 
KGKQERYAYS DAAADEIIEE FGGKDSSVNV QRYKGLGEMN AGQLWETTMD PESRILLRAD 
IEDAMVADEI FTILMGDKVE PRREFIQKNA KNVSNLDI