| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3643 |
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| Symbol | dxs |
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| ID | 4184887 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 4197369 |
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| End bp | 4199279 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638073630 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_680219 |
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| Protein GI | 110640009 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATTCAAC CTGGAGAACT ATTACGTACG ATTCATTCCC CCGAAGAGCT GAGAAAACTC
GATGAAACTC AACTCATTCA GGTAAGTGAA GAGTTACGTC AATTTATTGT AGACAATGTC
TCAGTATATG GCGGGCATTT TGCCGCGAGC CTAGGTGTGG TTGAACTGAC CGTTGCCTTA
CATTATGTAT TTAATACACC TGTAGATCAG CTTGTGTGGG ATGTTGGCCA CCAGGCATAC
GGGCATAAAA TATTAACCGG CCGTATGGAA AATTTCCATA CAAACCGAAC CTATAACGGA
CTTTCGGGTT TTCCGAAACG TTCCGAAAGC CCATATGATA CGTTTGGTGT CGGACACTCT
TCAACCTCTA TATCGGCAGC ACTGGGTATG GCTGTAGCCA GTCAGTATCA AAAAGACAAC
CGCCAGCACA TTGCCGTAAT CGGTGACGGT GCATTAACAG GCGGAATGGC TTTTGAAGCG
ATGAATCATG CCGGTGTTAC CAATTCAAAT TTGCTGATCG TGCTTAACGA CAATTGCATG
GCAATTGATC CGAATGTGGG TGCGCTGAAA GATTATCTGG TTGACATCAC AACTTCCCGC
ACGTACAACC GTGTGCGGGA TGAAGTATGG AACATGCTTG GAAAAATAAG TAAGTTCGGA
CCCAATGCGC AGGCAATAGC TTCTAAAGTT GAAAGCGGGT TAAAAGCATC GTTGCTTAAG
CAAAGCAACT TATTTGAATC GCTGCATATA CGTTATTTCG GTCCGGTAGA TGGCCATGAC
CTGAACCACC TGGTACAGGT GCTGAATGAT TTAAAAGATA TTCCCGGACC AAAGATCTTA
CACACCCTGA CCGTTAAAGG CAAGGGGTAT GCGCTTGCCG AAAAAGATCA GGTTAAATGG
CACGCGCCGG GAAAATTTGA TAAAGTAACG GGACAAATTC ACGTTAAGAC CTACGATACA
CCTCAGGCTC CTAAATACCA GGATGTTTTT GGAAATACCA TTATTGAACT GGCGGAAAAG
AATGATAAGA TCATGGGTAT TACGCCTGCC ATGCCTTCAG GATGTTCGCT GAATTTAATG
ATGGAAAAAA TGCCCGACCG GGCATTTGAT GTAGGCATTG CCGAACAGCA TGCCGTTACT
TTTTCTGCCG GTTTAGCCAC ACAGGGATTA ATTCCTTTCT GTAATATTTA TTCAACATTC
ATGCAGCGCG CATACGATCA GGTAATCCAT GATGTGTGTA TTCAGAATTT GCATGTTATT
TTCTGCCTGG ATCGTGCGGG CTTTGCCGGT GTCGACGGAC CAACACACCA CGGCGCCTAT
GATCTTGCTT TTTTCCGCTG CATACCAAAC TTAGTGGTTT CTGCTCCGAT GAATGAACAG
GAACTGCGGA ACTTAATGTA TACAGCTCAA CTGCAAAAAA ATAAAGGGCC TTTCTCTATC
CGTTACCCAC GCGGCCAGGG TGTAATGCCC AACTGGAAAA CACCTTTTGA AGAAATTACG
ATTGGCAAGG GCAGAAAAGT AAGTGACGGA GATGATGTTG CCATCCTCAG CATAGGCCAT
ATCGGTAATT ATGTTATTGA AGCAAAAGCA TTACTGCGCG AAGAAGAATT ATCTCCTGCC
CATTTTGATA TGCGTTTTGT TAAACCAATT GATGAAGAAA TGCTTCACCT GGTGTTTAAG
AAATTTAAAA AAATAATTAC GGTGGAAGAT GGCTGCTTAA TGGGTGGCTT TGGTTCGGCC
GTATTGGAAT TTATGGCAGA TAACAACTAT GCGGCGCAAG TAATCCGGCT GGGTATTCCC
GACCGTATTG TTGAACATGG TGAGCAGGCT GAACTGCACA AAGAATGCGG CTTCGACCCG
CAAAGCATTG CCAGAACCGT TCGTAACCTT TCCGGTGTTG TATTAAAATA A
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| Protein sequence | MIQPGELLRT IHSPEELRKL DETQLIQVSE ELRQFIVDNV SVYGGHFAAS LGVVELTVAL
HYVFNTPVDQ LVWDVGHQAY GHKILTGRME NFHTNRTYNG LSGFPKRSES PYDTFGVGHS
STSISAALGM AVASQYQKDN RQHIAVIGDG ALTGGMAFEA MNHAGVTNSN LLIVLNDNCM
AIDPNVGALK DYLVDITTSR TYNRVRDEVW NMLGKISKFG PNAQAIASKV ESGLKASLLK
QSNLFESLHI RYFGPVDGHD LNHLVQVLND LKDIPGPKIL HTLTVKGKGY ALAEKDQVKW
HAPGKFDKVT GQIHVKTYDT PQAPKYQDVF GNTIIELAEK NDKIMGITPA MPSGCSLNLM
MEKMPDRAFD VGIAEQHAVT FSAGLATQGL IPFCNIYSTF MQRAYDQVIH DVCIQNLHVI
FCLDRAGFAG VDGPTHHGAY DLAFFRCIPN LVVSAPMNEQ ELRNLMYTAQ LQKNKGPFSI
RYPRGQGVMP NWKTPFEEIT IGKGRKVSDG DDVAILSIGH IGNYVIEAKA LLREEELSPA
HFDMRFVKPI DEEMLHLVFK KFKKIITVED GCLMGGFGSA VLEFMADNNY AAQVIRLGIP
DRIVEHGEQA ELHKECGFDP QSIARTVRNL SGVVLK
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