Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_3530 |
Symbol | rsaD |
ID | 4186584 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 4085410 |
End bp | 4087182 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638073517 |
Product | ABC transporter, ATP-binding/permease |
Protein accession | YP_680106 |
Protein GI | 110639896 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.672415 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCTCTGA ATATACATTC TATATCTATA ATGGAAAAAA AGAAAAATAA AGTAACACTT GCGCAGGTTT TCAAAACATT TATTTGGCCA CGAAGAACAA TCCTGTTGAT CGGTTTAATC ATGATTATTA TAAGCCGGTT GGCCAGCCTT GTTTTACCGG GAGCCAGCAA ATATTTACTG GATGATGTTG TGGCCAATAA AGACATCGAT ATGCTTTATA CGCTGCTTTG GGTTGTTGGT TTATCGATTG CGGTAAATGC TGCCATGTCT TTTTTACTGA CAAAACTATT AAGTGTGGAA GCACAATTGC TGATTTCAAA ATTACGTGTG CAGGTGCAGC GTAAAATTCT GGGTTTACCC ATCAGTTATT TCGATAATAA TAAATCAGGC GCTTTGGTAT CCCGGATCAT GACGGATGTA GAAGGGGTAC GAAACCTGAT CGGTACGGGT TTGGTTCAGC TGATCGGAGG AACAATTACG TCGGTAATCG CGCTTATACT GCTGATAAAA ATCAGTCCCG TTATGACGGT ATATGTTTTG CTGCCGGTAG CTATTTTTGC GTTCATTGCG ATGAAAGCAT TCGGATACAT CCGCCCGATC TTTAAAGAGC GGGGTATAAT AAATGCAGAT GTAACCGGCC GGTTAACGGA AACTTTAAAC GGTGTCCGCA TCATTAAAGG GTTTAACGCA GAAGAGCAGG AAAACAAAAC GTTTGAAGCA GGTGTGGAAC GCTTGTTTGA TAATGTGAAA AAAAGTTTAA CCTCTACGTC ACTAATAACC AGCGCTTCGT TATTTCTCCT GGGTATGGCA ACATTAGGTA TCATGGGCAT CGGCGGTTAC TTAATGATTA AAGGTGAAAT GACCAGCGGT GATTTTCTTT CGTTCACGTT ATATCTTGGT TTTATGATTG CGCCGATCGT TCAGATGAGT AATATCGGAA GCCAGCTGAC AGAGGCCTTT GCCGGCTTGG ATCGTACGGA AGAAATCATG AATATGGACC CGGAAGAGGA TACTGAAAAA CGGAAAACGG TATTGAAGGA AATTAAAGGA GACGTTACCT TTGATGGTGT TTCGTTTGCG TATCAGGAAG GAAAAGAAGT ATTACACGAT GTAAGCTTTG ATGCTCCTGC GGGAACGGTT ACGGCGCTTG TTGGCACGTC AGGTTCAGGT AAATCAACCA TTGCCGGTTT GGTTGCTACG TTCCTGAATC CTGAATCAGG AAAAATCACG ATTGATGGAG TAGATTTATC CGAAGTTACG TTGAGCAGCT ATCGCAAAAA TTTAGGAGTG GTCTTACAGG ATGATTTTCT GTTTGAAGGA ACGATCAGAG AAAACATTTT ATTTCCACGG CCAAATGCAA CCGAAGAACA ACTGCTCAAT GCCGTGAAAG CAGGGTATGT AAATGAATTT ACAGACCGTT TTGAAAAAGG GCTGGACACA TTAATTGGAG AGCGTGGCGT TAAATTATCA GGCGGGCAGC GTCAGCGGAT TGCAATAGCA CGTGCGATAC TGGCAGATCC TAAAATTATT ATTCTGGATG AAGCAACCTC AAATCTTGAT ACGCAAAGCG AATCGCTGAT CCAGCAGAGC TTAGCTGAGT TAATGAAAGG CAGGACAACA TTTGTGATTG CACACAGGTT AAGCACGATC AGGCAGGCTA ACCAGATTCT GGTAATTGAA AACGGAAAAA TTGCCGAACA GGGAAGCCAT GCAGAATTGA TTGCAAAAGA AGGACGGTAT TATGAACTGC ATACATACCA GGCAAGAATT TAA
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Protein sequence | MSLNIHSISI MEKKKNKVTL AQVFKTFIWP RRTILLIGLI MIIISRLASL VLPGASKYLL DDVVANKDID MLYTLLWVVG LSIAVNAAMS FLLTKLLSVE AQLLISKLRV QVQRKILGLP ISYFDNNKSG ALVSRIMTDV EGVRNLIGTG LVQLIGGTIT SVIALILLIK ISPVMTVYVL LPVAIFAFIA MKAFGYIRPI FKERGIINAD VTGRLTETLN GVRIIKGFNA EEQENKTFEA GVERLFDNVK KSLTSTSLIT SASLFLLGMA TLGIMGIGGY LMIKGEMTSG DFLSFTLYLG FMIAPIVQMS NIGSQLTEAF AGLDRTEEIM NMDPEEDTEK RKTVLKEIKG DVTFDGVSFA YQEGKEVLHD VSFDAPAGTV TALVGTSGSG KSTIAGLVAT FLNPESGKIT IDGVDLSEVT LSSYRKNLGV VLQDDFLFEG TIRENILFPR PNATEEQLLN AVKAGYVNEF TDRFEKGLDT LIGERGVKLS GGQRQRIAIA RAILADPKII ILDEATSNLD TQSESLIQQS LAELMKGRTT FVIAHRLSTI RQANQILVIE NGKIAEQGSH AELIAKEGRY YELHTYQARI
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