Gene CHU_3360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_3360 
SymbollpdA 
ID4185055 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3838046 
End bp3839446 
Gene Length1401 bp 
Protein Length466 aa 
Translation table11 
GC content43% 
IMG OID638073350 
Productdihydrolipoyl dehydrogenanse 
Protein accessionYP_679939 
Protein GI110639729 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0306833 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACGACG TAGTAGTTAT CGGTTCTGGT CCTGGTGGGT ATGTAGCAGC AATCCGTTGC 
GCACAGCTTG GTATGAAGAC CGCATTGATT GAAAAATATA GCACGCTGGG TGGTACCTGC
TTAAACGTAG GTTGTATTCC TTCAAAAGCT TTACTGGATT CATCTGAACA TTATTACAAT
GCAACACACA CGTTCAAAGA ACATGGCATT GATGTAAAAG ATGTAAAAGT GAATCTGAAA
CAAATGATTG ACCGCAAGGC AGGTGTTGTA AAACAAACAT GCGACGGCAT CAACTATTTG
ATGAAGAAGA ATAAAGTCGA TGTGCATACA GGCATCGGTT CTTTCGTTGA TAAAAACACG
ATTAAAGTAA CCGCTGCTGA CGGAAGCGTG AAAGAATTGA AAACAGCGAA AACAATTATC
GCTACCGGTT CTAAGCCTAC ATCGTTACCA AATGTTGCAA TCGATAAAAA ACGAATCATA
ACTTCTACGG AAGCATTGGA ACTGACAGAA GTACCAAAAC ACCTGATCGT TATTGGTGGC
GGCGTTATTG GTATGGAACT TGGTTCGGTA TATGCACGTT TGGGCGCGAA AGTTTCTGTC
GTTGAATTCA TGGATACCTT GATTCCTACG ATGGATAAAG CGTTGGGTAA AGAATTGATC
AAAGTTTCTA AAAACCATTT AGGTTTCGAT TTTTACTTCA GTCATAAAGT AACAGGCGCA
ACGGCTAAAG GCAAGGAAGT AACGGTTACG GCAGAAGATA AAGACGGTAA AGTACTGGAA
TTGAAAGGTG ATTATGTGTT GGTAGCAACA GGGCGCCGTC CGTACACAGA AGGTTTAGGC
CTTGAAGCAG CAGGTGTAAA ATTAGACGAA CGCGGCAGAG TAGCTGTTGA CGGCCACTTA
CAGACAAACG TTCCGGGCAT TTATGCAATC GGTGACGTGG TTGTTGGCGC CATGCTTGCA
CACAAAGCAG AAGAAGAAGG CGTGTTTGTT GCAGAATCGA TCGCCGGACA AAAACCACAC
ATCAATTATA ACTTAATACC GGGTGTTGTG TATACCTGGC CGGAAGTTGC AGCGGTTGGT
TATACCGAAG AGCAATTGAA AAAGGACGGC AAAGCATACA AAGTAGGAAA CTTCCCGTTC
AAAGCATCCG GTAGAGCGAG AGCGAGCATG GATCTGGATG GTTTTGTAAA AGTACTTGCC
GACAAAGAAA CAGACGAAAT TTTAGGTGTA CATATGATCG GGCCACGTGT GGCAGATATG
ATCGCAGAAG CAGTGGTTGC AATGGAATTC AGAGCATCAG CTGAAGACAT CAGCAGAATG
TCTCATGCGC ATCCAACGTT CACAGAATCA TTTAAAGAAG CGTGTTTAGC TGCTACGGAT
AACAGAGCGC TTCACATTTA A
 
Protein sequence
MYDVVVIGSG PGGYVAAIRC AQLGMKTALI EKYSTLGGTC LNVGCIPSKA LLDSSEHYYN 
ATHTFKEHGI DVKDVKVNLK QMIDRKAGVV KQTCDGINYL MKKNKVDVHT GIGSFVDKNT
IKVTAADGSV KELKTAKTII ATGSKPTSLP NVAIDKKRII TSTEALELTE VPKHLIVIGG
GVIGMELGSV YARLGAKVSV VEFMDTLIPT MDKALGKELI KVSKNHLGFD FYFSHKVTGA
TAKGKEVTVT AEDKDGKVLE LKGDYVLVAT GRRPYTEGLG LEAAGVKLDE RGRVAVDGHL
QTNVPGIYAI GDVVVGAMLA HKAEEEGVFV AESIAGQKPH INYNLIPGVV YTWPEVAAVG
YTEEQLKKDG KAYKVGNFPF KASGRARASM DLDGFVKVLA DKETDEILGV HMIGPRVADM
IAEAVVAMEF RASAEDISRM SHAHPTFTES FKEACLAATD NRALHI