| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_3136 |
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| Symbol | rpoA |
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| ID | 4183614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3584589 |
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| End bp | 3585578 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 638073124 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_679718 |
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| Protein GI | 110639509 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0382544 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.920784 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTATTC TTTCTTTTCA AATGCCAGAA AAAGTGGTAA TGGAAAAAGC AGACGATTTT
CATGGTCTGT TCGAATTCAA GCCGCTTGAA AAAGGATATG GTGTAACTAT CGGTAATGCT
TTAAGAAGAA TTTTATTATC TTCTCTTGAA GGTTATGCGA TCACAGGAAT CAAAGTTCCT
GGCGTGTTAC ACGAGTTCTC AACAATTCCT GGCGTAAGGG AAGATGTAAC TGAGATTATC
TTGAACCTTA AGCAAGTTCG TTTCAAAAAG ATTTCTGACG TGAACGAAAA TAAAATCGTT
GTTAGTATCA AGAAACAAGC TTCTTTCAAG GCTGGAGATA TTGCTAAGTT TACTTCTGCT
TATCAGATCC TAAACCCTGA ATTATTAATC TGCAATGTAG ATTCTAATTC AAACTTTGAC
ATTGAGCTAA CACTTGAAAA AGGTCGTGGT TATTTGCCTG CAGAAGAGAA CAAACCAGCA
GAACAAATCT TTGGTTATAT TCCAATCGAT GCTATTTTTA CACCTATCAA AAATGTAAAA
TACAGCGTTG AGAATACAAG GGTAGAACAA AGAACGGATT ACGAAAAACT AATTCTTGAA
ATATTAACGG ATGGGTCTAT TCACCCGGAA GATGCATTGA AAGGTGCTGC TAATATTTTA
ATAAAACACT TCATGTTATT CTCAGATCAA ACAATGACGT TTGAAGCTGT GAAAGCTGAG
GAAGAAGAGA CAGTTGATGA AGAATTCTTA CACATGAGAA AACTTCTTAA AACTTCTCTG
GCTGATCTAG ACTTGTCTGT ACGTGCTTAC AACTGTTTAA AGGCTGCTGA TATCAAAACA
TTAGGAGAGC TTGCTACTCT TGATATTTCT GACATGATGA AGTTCCGCAA CTTTGGTAAG
AAGTCTCTAA ACGAGTTAGA GCAGTTAATT ATAGATAAAA ACTTATCCTT TGGAATGGAT
ACGGCTAAGT ACAAACTTGA CGAGGATTAA
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| Protein sequence | MSILSFQMPE KVVMEKADDF HGLFEFKPLE KGYGVTIGNA LRRILLSSLE GYAITGIKVP
GVLHEFSTIP GVREDVTEII LNLKQVRFKK ISDVNENKIV VSIKKQASFK AGDIAKFTSA
YQILNPELLI CNVDSNSNFD IELTLEKGRG YLPAEENKPA EQIFGYIPID AIFTPIKNVK
YSVENTRVEQ RTDYEKLILE ILTDGSIHPE DALKGAANIL IKHFMLFSDQ TMTFEAVKAE
EEETVDEEFL HMRKLLKTSL ADLDLSVRAY NCLKAADIKT LGELATLDIS DMMKFRNFGK
KSLNELEQLI IDKNLSFGMD TAKYKLDED
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