Gene CHU_2888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_2888 
Symbolrfe 
ID4184479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp3302727 
End bp3303869 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content33% 
IMG OID638072878 
Productglycosyl transferase family protein 
Protein accessionYP_679477 
Protein GI110639268 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0472] UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 
TIGRFAM ID[TIGR02380] undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.9692e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0658114 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATA TTCTATTTCA GTACGCAGAT TTGTTGTTAG CATACATATT GTCATTTGCT 
TCAGCATTTA TAGCTATACC GATTGTTATC AAACAATCTA AAAAGAATAA TCTTCTTGAT
AAACCAGATT TCAGGAAACA GCATAAAGAG CCAATACCAA CGATGGGAGG AGTAGGAATC
TTTGCAGGTC TAATTGTATC AGGATTTATA TGGATTGATT TACTTTCTGT TCGTGAGTCT
ATAGGTATTT CTGTTGCAAT TTCAATGTTG CTTGTAACGG GTATCGTAGA TGACATAAAA
GGTCTTTCAG CAGTATTCCG TTTGGGAATT CAATGTATAG GAGGTGTATT GGCTATTCAG
GCCGGACTGG TAATTCACTT ACCATCTATT TTTCAATTCA GTGTAGAAAC GATGATGATC
ATTGAATACG GGGTTACCAT ATTTTTAATT GCAGGTGTAA CAAATGCATT TAATTTAATT
GATGGTATTG ATGGCTTGGC TGGTGGATTG GGATTTATAA ATGCAAGCAT GTTTGGTTTC
TTATTCCTAT ATTTTGGAAA TACTGGCTTT GCAGTTTTGT CATTCTCTTT TGCTGCAGCC
TTACTGGCTT TTTTAAAATA CAATTTCAAT CCAGCCAGAA TCTTTATGGG TGATACCGGT
TCATTGGTAT TAGGTTACCT CATGATTGTA TTTGCTATCA AAGTATTTAA TCTTTCTTAT
GCGCATACCC ATTCAAATAC CTTTATACTT CTCGTATTCT CAATTGTTTT AGTGCCTGTT
ATTGATACTG CCAGAGTGTT TCTATTTCGT ATTCTGAAAG GTAAATCGCC TTTCTCTGCT
GATCGTTCTC ACATTCATCA TTTGCTTTTA AAAACCGGGT TTAACCATAA GAAAGCTTCT
TTGATTTTAT GTTTTGCAAA TATCGTATTG ATTGTTGAAG CTTATTTATT GAGAAATGTA
GATATACCAC TGGCAATTTT ACTACTAATT GTATCAGCAA TATTTTTAAT CGAAATTATT
TCTATTAAAC GATTATTTAA AATAAGAACC ACTGTTCATA TACTATACAA TGAGTATAAG
AAAGGGAGTG CAGACAATCA GCTTTTGTTA AAATATTTAA ATGAGAAGAA AAAATATGAA
TGA
 
Protein sequence
MENILFQYAD LLLAYILSFA SAFIAIPIVI KQSKKNNLLD KPDFRKQHKE PIPTMGGVGI 
FAGLIVSGFI WIDLLSVRES IGISVAISML LVTGIVDDIK GLSAVFRLGI QCIGGVLAIQ
AGLVIHLPSI FQFSVETMMI IEYGVTIFLI AGVTNAFNLI DGIDGLAGGL GFINASMFGF
LFLYFGNTGF AVLSFSFAAA LLAFLKYNFN PARIFMGDTG SLVLGYLMIV FAIKVFNLSY
AHTHSNTFIL LVFSIVLVPV IDTARVFLFR ILKGKSPFSA DRSHIHHLLL KTGFNHKKAS
LILCFANIVL IVEAYLLRNV DIPLAILLLI VSAIFLIEII SIKRLFKIRT TVHILYNEYK
KGSADNQLLL KYLNEKKKYE