Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_2886 |
Symbol | |
ID | 4184477 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 3300950 |
End bp | 3302194 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 638072876 |
Product | O-antigen ligase-like |
Protein accession | YP_679475 |
Protein GI | 110639266 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0000199013 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.062273 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGATATTTA TATTGTTTAT GAGATTGGTT GGTTTCTCTA CCATCAGCGA CAGTGCAGCC ATAGCCAAAG TGCTTAAAAC AGGAATTGGG TTGATAATGA CAACCATCAC GATATTCATT TTTTATAGAC TCGTAAAAAA AGGGTTTATA CCATCCTTTA GATATCAGCA TGTATTAACA ATTCTATTTT ATTGCCTTTA TCTTTCTTTA GGTCTTATTT CGCTTGTATG GACTTCAGAT GTTGCCGTAT CCGCACTACA AATTACGCGA GACATTGAAA TGCTGGTTTT TTCTTTTTTC TTTATTTATA TCATTGTAAT GTTAAATCAT TACTATCCTG AAGATTTCAT TAGGATTAGC GCCATTATGG GGCCGGCGAT TGTATTGAAT CTTAGCATCT TTTTAATCGG AAACATTGTA GCTCCGGATA TTTTTATCCG AAAAACACAT GGTGGCGAAG TAAGCAGATT GGGGGGACAG ATGATGAATC CGAATGAGCT TGGCATGTTG TGCGGTGTAG CTATTGCCTG TTGTTTTGCT GAATTAAAAC AAAAAGCCAA TCTGATCTGG AATACAATCA TGATATTGAT TGCATTGTAT GCCTTATTCA TAACAGGATC CAGGTCTTCC ATGATTGGTT TCTTTTTAGT TGCCATGTAT TATGTGATCA TTTCAAAAAG TTATACATTG AAAGCAACAG TAGTTGCTGT TGGCATTCTA ATCATGCCAA TTGTTGTAAA TGTAATTTTT TTAAAGGAAG GTGCTAAAAC ATCCGGTACT TCAGGCGCGG AAGAAGTGCT ATCCATGACT GGAAGATTAC CGTTTTGGCA GGCTCTACTT TCAGAAGGAT TACCACGTGA ACCATTGCTA GGGTTTGGAT TTATGCGCAT CAATTACACC ACATATTTTC AGGGTGCCCA CACCTACCCT GCTGCGATGA CGCACAATAC ATTTATTCAG GTACTGATGA ATTTGGGGCT CATTGGCTTT TTTATTGTAT TGATTCAAAT GGTTTTTATG GTACGTACAA TCATAAAAGT TGAAGACAAA GCACAAAAAG AATTGATCTT TACATTACTG ATGCCCATAC TTATTAATTC TTTCACTGAA TTTGGAATAT GGGGAGAGGT TAATTACTCC ATTCTTTTTT ATCAAATCCT TATTCTAACT ATGGTAGTTA GATACAAAAA CCGATTCAGC ATTTTAGAAA AAATTATTCA AAAAAAGAAG TTAGGAATAG GTTAA
|
Protein sequence | MIFILFMRLV GFSTISDSAA IAKVLKTGIG LIMTTITIFI FYRLVKKGFI PSFRYQHVLT ILFYCLYLSL GLISLVWTSD VAVSALQITR DIEMLVFSFF FIYIIVMLNH YYPEDFIRIS AIMGPAIVLN LSIFLIGNIV APDIFIRKTH GGEVSRLGGQ MMNPNELGML CGVAIACCFA ELKQKANLIW NTIMILIALY ALFITGSRSS MIGFFLVAMY YVIISKSYTL KATVVAVGIL IMPIVVNVIF LKEGAKTSGT SGAEEVLSMT GRLPFWQALL SEGLPREPLL GFGFMRINYT TYFQGAHTYP AAMTHNTFIQ VLMNLGLIGF FIVLIQMVFM VRTIIKVEDK AQKELIFTLL MPILINSFTE FGIWGEVNYS ILFYQILILT MVVRYKNRFS ILEKIIQKKK LGIG
|
| |