| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2837 |
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| Symbol | |
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| ID | 4183403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 3237294 |
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| End bp | 3239984 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638072828 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_679427 |
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| Protein GI | 110639218 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTGG AAACCTATAA AGAGAAACGT AATTTCAAAC ATACACCTGA ACCGGTAGCA
AAAAAAAATG CAGCAGGTAC GGAATTGAAA TTTGTGATAC AGCGGCATGC CGCTTCACAT
CTGCATTATG ATTTCAGGCT TGAAATGGAA GGTGTATTAA AAAGCTGGGC CGTTCCGAAA
GGTCCTTCAT TAAACCCTTC AGACAAAAGA CTGGCGATGA TGGTAGAGGA TCATCCCTTT
GCATACCGTA CATTTCATGG CGTAATTCCG GAAGGAAATT ATGGTGCCGG TATTGTAGAG
ATCTGGGATG AAGGCACGTA TCATGCCATC GGAAATGAAG ATCGTAAAAC CGGTGAAAAA
GAATTATTGG CCGATCTTAA AAAAGGAAAC CTGAAATTTG TACTGCATGG TAAAAAACTC
AAAGGTGAAT TTGCCCTGGT TAAAATAAAA AATAATAATT CATCCAAAGA CAATGCCTGG
CTGCTGATCA AACACAAAGA TGCGTATGCA ACAGAAGATG CTTACAGCAG CGAAGATTAT
GTTCCGGCAA ATTCTAAAAT TGTAAAAAAA ACGGCTGCTT CTAAAAAACC GGCAACACCT
GTTTCAAAAA AATCGGCTAT TAAAATGGTA GATGATAAAC CTGCAACAGA TAAAAAAAAA
GTACAGTCCG CTCCGGCACA AAAAATAAAA CAAGGTAAAG ACCCGATGCC GCATGAGGTG
AAACCCATGC TGGCAAAATT AAAAGACGCA CCATTTGATT CACCGGAATG GATTTTTGAA
ATCAAGTGGG ATGGCTATCG GGCCATTGCA GAAATTGATC AGGGTAAGGT AGAATTGTAT
TCCAGAAATC TGATTTCCTT TACTAAGAAA TATAAACCAA TTGTTGAGTC ACTTCAGTCA
TTCGGACACA ATGTTGTGCT GGATGGAGAG GTTATTGTAT TAAATGCAGA CGGCACATCA
AGTTTCCAGA TGCTGCAGCA GTACGATGAA ACTCCAAGTC CGGATCTATG TTACTGTGTT
TTTGATATTC TGTTTCTGGA TGGCCGGGAC CTGCGGGATT TACCCTTGCT TGAGCGCAAA
GCAATACTTA AAAAGGTAAT ACCTGATCTT CCCAATCTGA AATATAGTGA CCACGTTGAA
AAGGAAGGCA TCCGTTTTTT TGAACTTGCA AAGAAAAATA AACTGGAAGG GATCATGGCT
AAAAGAGCCG ATAGTATTTA CCGCCTTGGC TCAAGGTCTG ACCAATGGAT CAAACTTAAA
ATCGTAAAAT CACAGGAAGC AATTATCTGT GGTTTTACGG CCCCGAGAAA CTCACGGAAA
GATTTTGGCG CATTGATTTT GGGTGCCTAT GAAAATGGAC GACTGGTATA TATCGGCCAT
ACGGGCGGAG GCTTTACAAT GGCGTTACTG GCTTCCACAT TAAAATTGAT GAAACCGCTG
ATTCAGAAAG AATCTCCGTT TGATGTGAAA ATAAAAACAA ATGAAAAAGT AACCTGGATA
AAACCTAAGC TGGTATGTGC AATTGCTTTT TCAGAATGGA CAAGCGATGG ACATATGCGG
CAACCAATTT TTCAGGGTAT GCGCATTGAT AAAAAAGTCA GTGAAGTGAC ACGGGAATTG
CCTACGGTTA TAAACGTACC ACAAGACAAT GCTATGGAAG TAACGCGTAA CATAAAACAA
ACAGCGGCAA AAACAAGCAC GAAAAAAACG GCTCATAAAA AAGCAGCCTC AAAAAAAACA
ACCACTAATA AAAAGACAAC GGATGTTGCA GCTGCTGAAA ATTCAAAGGC CGGCGAATTT
AAAATCGATG GACAGGTTTT AAAAATTTCA AACCGTTCAA AAGTTTATTG GCCGGAAGAT
GGTTATACAA AAGGCGACCT GATTGATTAT TATATGCAGG CAGCAGATTA TATACTGCCT
TATTTAAAAG ATCGTCCGGA GTCGTTAAAC CGGCATCCGA ATGGAATTGA CGGCTCAAGC
TTTTTTCAAA AAGATATGGG AGACACATTG CCGGACTGGA TCGAAGCTAA AGAAATTTTT
TCTGAATCAA ACAGCAAGGA TATTAACTAC GTGCTATGCC AGAATAAAGC AACATTGATT
TACATGGCAA ATCTTGGCTG TATTGAAATC AATCCGTGGA ACTCACGTGT TAAAAAAATT
GAGTATCCGG ATTTTATTGT GATTGATCTT GACCCAAGTG ATAACAATAC GTTTGATGAA
GTTATTGAGA CTGCGTTAGT AGTTAAAAAG ATTCTGGATA AAGGAGGGAT AGATGCGTAT
TGTAAAACAT CTGGGGCTAC CGGACTGCAT ATTTATATTC CGTTGGGCGC AAAATATACG
TATGAACAGG GAAAGAATTT TGCACATATT ATCGCGCAGC TTACCAATAA TGAATTGCCG
GAACTAACCA GTCTGGTACG GAATCCGAAA GAACGCAAAA AGCAGATTTA TGTAGATTAT
TTGCAGAACC GCGGCGGACA AACACTTGCT GCGCCTTACA GTGTAAGGCC TAAGCCTGGG
GCGACCGTTT CAACACCGCT GGAATGGAAG GAAGTTAAAA AAGGATTACA TCCATCCACA
TTTACCATTA AAACTATTTT CAAACGTCTG GAGAAAAAAG GAGATTTGTT TAAAGGTGTA
TTAGGAAAAG GTATTGATAT GGAGAAATGT TTGAAAAAAC TGGGGGCGTA G
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| Protein sequence | MALETYKEKR NFKHTPEPVA KKNAAGTELK FVIQRHAASH LHYDFRLEME GVLKSWAVPK
GPSLNPSDKR LAMMVEDHPF AYRTFHGVIP EGNYGAGIVE IWDEGTYHAI GNEDRKTGEK
ELLADLKKGN LKFVLHGKKL KGEFALVKIK NNNSSKDNAW LLIKHKDAYA TEDAYSSEDY
VPANSKIVKK TAASKKPATP VSKKSAIKMV DDKPATDKKK VQSAPAQKIK QGKDPMPHEV
KPMLAKLKDA PFDSPEWIFE IKWDGYRAIA EIDQGKVELY SRNLISFTKK YKPIVESLQS
FGHNVVLDGE VIVLNADGTS SFQMLQQYDE TPSPDLCYCV FDILFLDGRD LRDLPLLERK
AILKKVIPDL PNLKYSDHVE KEGIRFFELA KKNKLEGIMA KRADSIYRLG SRSDQWIKLK
IVKSQEAIIC GFTAPRNSRK DFGALILGAY ENGRLVYIGH TGGGFTMALL ASTLKLMKPL
IQKESPFDVK IKTNEKVTWI KPKLVCAIAF SEWTSDGHMR QPIFQGMRID KKVSEVTREL
PTVINVPQDN AMEVTRNIKQ TAAKTSTKKT AHKKAASKKT TTNKKTTDVA AAENSKAGEF
KIDGQVLKIS NRSKVYWPED GYTKGDLIDY YMQAADYILP YLKDRPESLN RHPNGIDGSS
FFQKDMGDTL PDWIEAKEIF SESNSKDINY VLCQNKATLI YMANLGCIEI NPWNSRVKKI
EYPDFIVIDL DPSDNNTFDE VIETALVVKK ILDKGGIDAY CKTSGATGLH IYIPLGAKYT
YEQGKNFAHI IAQLTNNELP ELTSLVRNPK ERKKQIYVDY LQNRGGQTLA APYSVRPKPG
ATVSTPLEWK EVKKGLHPST FTIKTIFKRL EKKGDLFKGV LGKGIDMEKC LKKLGA
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