| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2467 |
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| Symbol | sppA |
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| ID | 4184416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2835155 |
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| End bp | 2836906 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638072460 |
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| Product | protease IV; signal peptide peptidase |
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| Protein accession | YP_679063 |
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| Protein GI | 110638854 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type
[TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.023523 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTA TAAAACAAGT TCTGGCTGTT TTTGTTGCGT TTGTATTGTT TGTTGTGCTG
GGCATTCTCA TTATCGTAGC ATTGTTCTCA TCCGGTAAAG AAGATGTTTC TGCAGCCGTA
AAAGAAAATT CTGTATTAAG GCTTACGCTG GATAACGAAA TTATTGAACG TGAATCAGAT
AAACTATTCG ATGGGTTGCT GGATCCGAGA GGTGCTGCTT CAAAGATCGG CCTGCTTGAA
TTAAGAGAAG CCATACAGGA AGCCGCTGTA AATGATAAGA TCAAAGGTAT TGTTATTGAG
ATTAAATTTG CGAATACCGG TATTGCTACC TGGAAAGAAT TAAGAGATGA ATTGACTGCA
TTTAAAAAAT CTGGGAAATT TATTATTGCT TATGGTGAAA TGTACACCGA AGCAGGATAC
TATCTGGCAT CTGTGGCAGA TGAAATATAT TTGCCTGAAT CAGGTATGCT TGAGTTTAAT
GGCATTGGTG TAAACATGCT TTATTTTAAA AACCTGTTGA GTAAAATAGG GGTTAAGACA
GAAGTGTTCC GTGTAGGTAA ATATAAAAGT GCAATTGAAC CGCTTGTTAA CGATCACATG
AGTGACGAAG ACAGAGAACA GGTACACTTA TATATAAACT CATTGTATTC AGTCATGCTG
AATGATATTG CGTCGTCCAG AAATATTCCG TTAGCGTCAT TAAAAAATAT TTCAGATTCA
ATGCTGGTAC GCAATGCGCA TGATGCAAAG AAATATGGCC TGGTTACAAA CGTAGCTTAT
TACGATGAGA TGTTATCTTC TCTGAAGAAA AAACTAACTG TTGAACCGGA TCAGGAAATT
GATTTTGTTT CATACAAAAA AATAATAAAA GGCAAACCTG AAAAAACAAC CTCAAGTGAA
CCGCATATCG CTGTTTTATT TGCCAACGGA GAAATTCAAT CGGGCAAAGG TGATAATGAA
ACAATCGGGT CAGAGACATT TTGTACAGAT TTACGTAGGC TGCGCGAAGA TAAAAATGTT
AAGGCAATTG TATTACGTGT GAACTCACCG GGTGGCAGTG CACTGGCATC GGATCTTATC
TGGAGAGAAA TTATGCTGGC ACGTGAAGTG AAACCCGTGA TTGCCTCTAT GGGTAATGTA
GCTGCATCAG GAGGCTATTA CATTGCTATG GCCTGTGATA CAATCGTGGC TTCACCGGCA
ACAATAACCG GTTCCATTGG CGTATTCGGT TTATTGATGA ATACAGAAGA TTTGCTGAAC
AACAAGCTGG GCATTTCTAC CGATCGTGAA AAGACCGGTT TATATTCCGA CCTTGGTTCG
CTTACACGCC CGGTAACAGA CGCGGAACGT ATGATTATTC AGAATGAAGT AAATGCCATT
TATGCTACGT TTATCAGAAA AGCGGCAGAG GGAAGACACA CTTCTGTTGA AACGATAGAA
GTACACGCAT CCGGTCGTGT ATGGGCAGGG AAAGATGCCA AAGAAAACAA CCTGATTGAT
GTATTCGGAG GCATGAATGA TGCTGTTATG CTGGCTGCTA AAGCAGCAAA TATGGGAGAA
AAATATGCGT TGGTGTATTA TCCGGAACAA AAAAATCAGG CTTTGATTGC TCTGATGAAT
GCTTTTTCAG ACGATGAAGA AGCAAAAATA AAAACCTTCG GCGCATACTA TACACATTTC
AAAACGCTAC AGTCTTTACC TAAATATCAA GGCGTACAGG CCCGGATTCC TTATTTTATG
GAAATAAAAT AA
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| Protein sequence | MSFIKQVLAV FVAFVLFVVL GILIIVALFS SGKEDVSAAV KENSVLRLTL DNEIIERESD
KLFDGLLDPR GAASKIGLLE LREAIQEAAV NDKIKGIVIE IKFANTGIAT WKELRDELTA
FKKSGKFIIA YGEMYTEAGY YLASVADEIY LPESGMLEFN GIGVNMLYFK NLLSKIGVKT
EVFRVGKYKS AIEPLVNDHM SDEDREQVHL YINSLYSVML NDIASSRNIP LASLKNISDS
MLVRNAHDAK KYGLVTNVAY YDEMLSSLKK KLTVEPDQEI DFVSYKKIIK GKPEKTTSSE
PHIAVLFANG EIQSGKGDNE TIGSETFCTD LRRLREDKNV KAIVLRVNSP GGSALASDLI
WREIMLAREV KPVIASMGNV AASGGYYIAM ACDTIVASPA TITGSIGVFG LLMNTEDLLN
NKLGISTDRE KTGLYSDLGS LTRPVTDAER MIIQNEVNAI YATFIRKAAE GRHTSVETIE
VHASGRVWAG KDAKENNLID VFGGMNDAVM LAAKAANMGE KYALVYYPEQ KNQALIALMN
AFSDDEEAKI KTFGAYYTHF KTLQSLPKYQ GVQARIPYFM EIK
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