| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_2003 |
|---|
| Symbol | |
|---|
| ID | 4187104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 2338640 |
|---|
| End bp | 2339947 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638072006 |
|---|
| Product | permease |
|---|
| Protein accession | YP_678611 |
|---|
| Protein GI | 110638402 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2270] Permeases of the major facilitator superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.307053 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCAA CAATAAAAAA CGATCCTAAA ATCATCAATG CCTGGTGCAC CTATGATTGG
GCCAATTCGG TTTATTCATT GACAATAACA ACGGCTATTT TTCCGGAATA TTTTTTAGGA
ATTACGACAA ATGAAACCAA CGGCAACCTG GTAGATTTTT TTGGTTTTCT TATTCCGAAT
ACGGTATTGT ATTCCTGGTC GGTTTCCATT GTGTTTTTAG TAGCGGCTAT ACTCAGTCCG
TTTCTGACAT CCATTGCTGA TTATTCCGGC TTGAAAAAAA CATTCATGAA AATATCGTGT
TATACCGGGG CATTGGCTTG TGCGGCCTTA TATTTTCTGA ATGCACAGAC CATTGAATTC
GGTGTACTGG CCTTTGTACT GGCAGGTATC GGTTACAGTT CCAGTATAGT ATTCTATAAT
TCTTATTTAC CTGAAATTGC TACCGAAGAT CAGTATGACC GTATCAGTGC CAAAGGCTAT
ACCTGGGGCT ATATCGGAAG TGTATTGCTG TTGATTATAA ACCTGGTGTG TTTGATCTTT
CATGAAAAAA TAGGGATTAC AGAAAGTTTT GCGGCACGTT TATCTTTCTT AACGGTTGGT
GTCTGGTGGC TGGGATTCGG ACAGCTTTCC TTTGCGGGCT TACCGCGGGC ACAGCAGAAA
AATAATACCG GTCATATGCT GACAAATGGT TTAAGAGAGT TGAATAAGGT ATGGAACAAC
ATTAAAAAAT TACCTTTACT GCAACGTTTC CTGGTTGGTT TTTTCTTTTA TAATATGGGT
GTACAAACAG TTATGTATCT GGCTCCGTTG TTTGCCAAAG AAGTTATTCA TATTGAAACA
GAATCATTGA TTGCAACAAT CCTGCTGATT CAGCTCGTAG CTATTGCCGG TGCATATGCG
TTAAATAAGT TGTCAAACAA AGTAGGTAAC ACACATGCGT TGATTATTGG TGTGGTTATA
TGGATCATTA TCTGCTGTAT GGGCTATGTG GTACAGCCAG GCTTAAGCTT CTTTATCCTT
GCGGGTTCCA TCGGTTTTGT AATGGGCGGG GTGCAATCCT TGTCACGTGC AACCTATTCT
AAACTTATGC CGGTGAATAC AAAAGATCAT GCTTCGTATT TCAGCTTTTT TGATGTAGTA
GATAAAATGT CGATCGTACT TGGTACCTTC AGTTATGGCC TGATCCGGCA AATCACCGGC
GACATGCGAA ACAGTTTAAT TGCACTCGGA ATTTATTTTG TGATCAGTAT ATTCTTCCTT
CGCCTCATTC CTTCCAGGCA GGTATATGAT ACACAGATGC CGGAGTAG
|
|---|
| Protein sequence | MQPTIKNDPK IINAWCTYDW ANSVYSLTIT TAIFPEYFLG ITTNETNGNL VDFFGFLIPN
TVLYSWSVSI VFLVAAILSP FLTSIADYSG LKKTFMKISC YTGALACAAL YFLNAQTIEF
GVLAFVLAGI GYSSSIVFYN SYLPEIATED QYDRISAKGY TWGYIGSVLL LIINLVCLIF
HEKIGITESF AARLSFLTVG VWWLGFGQLS FAGLPRAQQK NNTGHMLTNG LRELNKVWNN
IKKLPLLQRF LVGFFFYNMG VQTVMYLAPL FAKEVIHIET ESLIATILLI QLVAIAGAYA
LNKLSNKVGN THALIIGVVI WIIICCMGYV VQPGLSFFIL AGSIGFVMGG VQSLSRATYS
KLMPVNTKDH ASYFSFFDVV DKMSIVLGTF SYGLIRQITG DMRNSLIALG IYFVISIFFL
RLIPSRQVYD TQMPE
|
|---|
| |