Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1890 |
Symbol | |
ID | 4186766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 2209855 |
End bp | 2210676 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638071888 |
Product | Zn-dependent protease |
Protein accession | YP_678498 |
Protein GI | 110638289 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00690721 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTGGATAA GTAAGAAAAT AATTTATTTG ACGTCAGCAT TTTTAGTGAC GGGTGCAGTT TATACAGCAT GTAAAAGTGT AGCCGTTACA AACCGTAAGC AGCTCAGTCT TGTTTCTGAA TCGGAAATGA TAAAAATGAG TAATGAACAA TATGCACAAG TCATTCAACA GGGGCCGCTC AGTACCAATC AGGCTCAGGT GGATATGGTG AAGCGTGTTG GAAATACCAT CAAAGCAGCG GTTGAAAAAT ATATGGCTGA ACAGGGCCGC AGCAAAGAAT TGGAAGGCTA TAACTGGGAG TTTAACCTGA TCAAAAATGA TTCTACTGTA AATGCCTGGT GTATGCCTGG CGGTAAAGTT GCTTTTTATA CAGGTATTAT CCCCGTATGT GTTGATGAGT CAGGCATTGC TGTTGTCATG GGACATGAAG TAGCGCATGC CATTGCACAT CATGGTAATG AGCGTATGAG CCAGGAAATA ATAGCTCAGA CAGGCGGACA AGTTGTAGAC TATGCACTTT CAACAAAGTC AGCTCTTACA AGACAACTAT TTGGAACTGC TTACGGAGCA GGTGCACAAT ATGGTGTAAT CTTACCTTTC AGCAGAAAGC ATGAATCTGA AGCGGATAAA ATGGGTTTGG TATTTATGGC AATGGCTGGT TATGATCCGC ATGTTGCAGT TGATTTCTGG AAACGCATGA GTGCAATATC CGGCGGACAG GCGCCACCTG AGTTTATGTC TACACACCCT GCAGATTCAA GACGTGTAGC CGACCTTGAA GCATATTTAC CGGAAGCATT AAAGTATTAT CATCCGAAAT AA
|
Protein sequence | MWISKKIIYL TSAFLVTGAV YTACKSVAVT NRKQLSLVSE SEMIKMSNEQ YAQVIQQGPL STNQAQVDMV KRVGNTIKAA VEKYMAEQGR SKELEGYNWE FNLIKNDSTV NAWCMPGGKV AFYTGIIPVC VDESGIAVVM GHEVAHAIAH HGNERMSQEI IAQTGGQVVD YALSTKSALT RQLFGTAYGA GAQYGVILPF SRKHESEADK MGLVFMAMAG YDPHVAVDFW KRMSAISGGQ APPEFMSTHP ADSRRVADLE AYLPEALKYY HPK
|
| |