| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1888 |
|---|
| Symbol | mrcA |
|---|
| ID | 4186764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 2206829 |
|---|
| End bp | 2209060 |
|---|
| Gene Length | 2232 bp |
|---|
| Protein Length | 743 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638071886 |
|---|
| Product | glycosyltransferase |
|---|
| Protein accession | YP_678496 |
|---|
| Protein GI | 110638287 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0246487 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATT ATAATAAACT GGTAAGTTGG TTGTGGAAAG GTGCAGCCGC AATGTTTGCT
GGAATTATTT TTTTACTGCT GCTTGTATAC ATTAACCCGT TTAATTTATT TGGGTCGCTT
CCCAGTATTG ATGTGCTGGA AAATCCGGAA AGTGATCAGG CATCTGTTAT CTACTCCAGC
GACGGGAAAG TATTGGGTAA ATTTTATAAT CAGATAAACC GAACCGATGT TGAATACAAA
GATTTACCTC CTGTTTTGAT CAACGCGCTG ATCGCTACGG AGGATTCCCG TTTTTATGAT
CACTCGGGTG TAGATGTAAA AGGTATTGTT GCGATTGCTC CTTCATTGAT GATCGGCAGA
AGAAGAGGGT CCAGTACATT AACCCAGCAG CTGGCTAAAA ACTTATTCAG TTTAAGACGT
TCGGAGGAAT ATACAGGCAT ACTTGATAAT ACCATTGTAC ACAAAATTAA AGAATGGTTC
ATTGCCATTC AGCTGGAGAA ATCTTATTCC AAAAATGAAA TTCTGCTGAT GTATCTGAAC
ACGGTTGAAT TTGGAAATAA CAGCTTTGGT ATTCGTTCGG CAGCTAAAAA ATATTTTGGT
AAAAATGTAC ATGAATTGCA GCTGAATGAA GCCGCTTTAC TTGTAGGACT ACTTAAAGGA
CCTTCTTACT ATAATCCACG TAAAAAGCCT GAACGTGCTA AGAACCGCCG TAACACGGTG
TTAGACCAAA TGGTGAAATA TGAATACCTG TCTTCTGCGG AAGCAGTTAT TGCCCAGGCA
AAACCGTTGA ATCTCAATTT TCAGGATGAT GGAGAAGCAG CGGGTCTTGC ACCGCATTTC
AGAAATTACT TGAAGAAGGT GATGTTCAAC TGGTGTAAAG AACATGACAT GCATTTATAT
GAAGATGGTT TGAAGATTTA TACAACCATT GATACGCGCT TACAGGAAGT TGCTGAAGAT
GCTGTTAAAA AACATATGAG TTTTCTGCAA AAAGAATTTG ATAAAAACTG GTCGAAGTCT
GATCCGTGGA CAAAGTCTGA TCCGGATCTG GTTAAAAAAT TAGCAAAGAC TACATCACAT
TATAAAGAGC TTACGGCTGA ACTGGATGGC AATGAATCAC TGATCATGCT TGAAATGAAA
AAGAAGATTC CGATGCAGAT CTTTACCTGG AAAGGACGTG TGGATACAAT CATGTCTCCG
TTGGATTCGA TCAGACATTC CTTAAGAATG TTACGTACAG GATTGTTTTC AATGGATCCG
AAAACAGGTT ATGTACGTGC ATGGGTAGGC AATATTGATT ATGCAAACTA TCCGTTTGAT
CATGTACTAC AGGGGAAACG TCAGGCAGGT TCAACCTTCA AACCTATTTT GTATGCCTAT
ACAATGGAAG AAAAAGGATT GACTCCGGAT TCTAAATTTC CGGATGCACC TATAAGTATT
CCTGTTCCCG GCGGTTCACC GTGGACACCA AACAACAGTA ATGGTAAATT CTCTAACGAA
GAAATTACGT TGCGCCAGGC ATTGGCACGT TCTGTAAACT CAATCAGTGC ACAGCTTATG
AATCTGGTTG GCCCGGATTC GGTTGTAGCA TTTGCTAAAC GTATGGGTAT TAAAAGTCCG
TTGGAACCAA CACCGGCTCT TTGTCTGGGT ACAGGAGATG TTACGCTCTT TGAAATGGTG
AATGCCTATA GTGTGTTTGT AAATGAAGGT ATCTGGATGC AGCCGCAGTT TCTGCTGCGT
ATTGAAGATA AGTATGGCAA TGTGCTCGAA GAATTTAATA CAAACAGCAG GCAGGTGATC
AATGAAGAGA CTGCCTATAA CATGATTGAA TTGTTAAAAG GTTCGGTGGA AGAGGCCGGC
GGTACATCGG TAGACTTAAG AAGTAAATTC AATATACATG GAGATCTTGG CGGTAAAACA
GGTACCACGC AGGAATCTGC CGATGGCTGG TTTATGGGTA TTACGCCGAA TCTGGTTACG
GGTGTTTGGG TGGGAGGAGA GAAACGTGTG ATCCGTTTCA GTACCATGAC CTACGGACAA
GGTGCGCGCA TGGCTTTACC GGTGTGGGCG TATTATATGC AGGGTGTTCA GAAGCACAGT
GATGCCGGTT ATCCTGCGTC GCTGTTTACA AAACCGGATG GGAATGTAAA CGTCACGTCT
GATAAAGTAA ATATTCTGGA TGACGGTATG TTGCCGCAGG ACGCAGCAGA AGATGAAGTG
TATGATTATT GA
|
|---|
| Protein sequence | MKDYNKLVSW LWKGAAAMFA GIIFLLLLVY INPFNLFGSL PSIDVLENPE SDQASVIYSS
DGKVLGKFYN QINRTDVEYK DLPPVLINAL IATEDSRFYD HSGVDVKGIV AIAPSLMIGR
RRGSSTLTQQ LAKNLFSLRR SEEYTGILDN TIVHKIKEWF IAIQLEKSYS KNEILLMYLN
TVEFGNNSFG IRSAAKKYFG KNVHELQLNE AALLVGLLKG PSYYNPRKKP ERAKNRRNTV
LDQMVKYEYL SSAEAVIAQA KPLNLNFQDD GEAAGLAPHF RNYLKKVMFN WCKEHDMHLY
EDGLKIYTTI DTRLQEVAED AVKKHMSFLQ KEFDKNWSKS DPWTKSDPDL VKKLAKTTSH
YKELTAELDG NESLIMLEMK KKIPMQIFTW KGRVDTIMSP LDSIRHSLRM LRTGLFSMDP
KTGYVRAWVG NIDYANYPFD HVLQGKRQAG STFKPILYAY TMEEKGLTPD SKFPDAPISI
PVPGGSPWTP NNSNGKFSNE EITLRQALAR SVNSISAQLM NLVGPDSVVA FAKRMGIKSP
LEPTPALCLG TGDVTLFEMV NAYSVFVNEG IWMQPQFLLR IEDKYGNVLE EFNTNSRQVI
NEETAYNMIE LLKGSVEEAG GTSVDLRSKF NIHGDLGGKT GTTQESADGW FMGITPNLVT
GVWVGGEKRV IRFSTMTYGQ GARMALPVWA YYMQGVQKHS DAGYPASLFT KPDGNVNVTS
DKVNILDDGM LPQDAAEDEV YDY
|
|---|
| |