| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1785 |
|---|
| Symbol | rpoD |
|---|
| ID | 4184681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 2093042 |
|---|
| End bp | 2093905 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638071784 |
|---|
| Product | RNA polymerase sigma-70 factor |
|---|
| Protein accession | YP_678394 |
|---|
| Protein GI | 110638185 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.000910487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.104355 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACAGC TAAAGATTAG TAAACAGATA ACCAACAGAG AGAGTCAATC TCTGGACAAG
TATTTACAGG AAATCGGGAA AGTAGATTTG CTTACCCCGG ATGAAGAAGT AGATCTTGCG
AAACGTATTC GCGAAGGTGA TCAGTTAGCA TTAGAAAAAT TAACAAAAGC CAACCTGCGT
TTCGTCGTTT CGGTTGCAAA ACAATACCAA AACCAGGGTT TATCTCTGGG GGATTTAATT
AATGAAGGAA ACTTAGGTTT GATCAAAGCG GCTCAACGTT TTGACGAAAC CCGTGGTTTC
AAATTTATCT CTTATGCTGT ATGGTGGATC CGTCAGTCAA TTCTGCAGGC ATTAGCTGAG
CAGTCACGTA TTGTGCGTTT ACCATTGAAC AGAGTAGGTT CATTAAACAA GATCTCTAAA
ACATTCTCTG AACTGGAACA AAAATATGAA AGAGAGCCGT CTCCGGACGA ACTTGCTGAA
GTATTGGAAG TTTCTACAGC AGAGGTTGTT GATACACTTA AAATTTCAGG TCGTCACGTA
TCTATGGATG CACCTTTTGT ACAAGGTGAA GAAAACAGTT TATTAGATGT ACTTGAAAAC
AGCAGCGAAT CAGCTCCTGA TTCAAGTTTA ATGAATGATT CGTTAAGAAG AGAAGTACAA
CGTGCTTTAT CTACACTAAC TCAACGTGAA GCAGATGTAA TTTCTCTTTA CTTTGGTTTA
AATGGCGAAC ATTCTATGAC GCTTGAAGAG ATCGGTGAAA AGTTTAATTT AACAAGAGAA
CGTGTTCGTC AGATCAAAGA AAAAGCAATT CGTCGTTTAA GACATACCTC AAGAAGTAAA
GCATTGAAAC CTTATTTAGG ATAA
|
|---|
| Protein sequence | MRQLKISKQI TNRESQSLDK YLQEIGKVDL LTPDEEVDLA KRIREGDQLA LEKLTKANLR
FVVSVAKQYQ NQGLSLGDLI NEGNLGLIKA AQRFDETRGF KFISYAVWWI RQSILQALAE
QSRIVRLPLN RVGSLNKISK TFSELEQKYE REPSPDELAE VLEVSTAEVV DTLKISGRHV
SMDAPFVQGE ENSLLDVLEN SSESAPDSSL MNDSLRREVQ RALSTLTQRE ADVISLYFGL
NGEHSMTLEE IGEKFNLTRE RVRQIKEKAI RRLRHTSRSK ALKPYLG
|
|---|
| |