| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1759 |
|---|
| Symbol | menD |
|---|
| ID | 4184849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 2065310 |
|---|
| End bp | 2066989 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638071758 |
|---|
| Product | 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase |
|---|
| Protein accession | YP_678368 |
|---|
| Protein GI | 110638159 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1165] 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase |
|---|
| TIGRFAM ID | [TIGR00173] 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.826073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0391335 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCAAGCAA TCTACGATAT ACCCGAAATA CTCTTTCAGC ATGGCGTAAC AGATGTTGTA
CTTTCTCCGG GATCACGCTG TGCACCCTTA AGCATAGCCT TTTCCCGTCA TAAAAAACTG
CAGATAAAAG TTGTTCCTGA CGAACGTTCG GCCGCATTCA TTGCACTGGG TATGTCGCTG
CAAACGCAGA AACCTACGGT ATTGATCTGC ACGTCAGGTT CTGCCTTATA TAACTACGCG
CCTGCCATTG TAGAAGCCTA TTATCAGCGT GTACCGTTGA TTGTACTGTC TGCAGACCGT
CCGCCGGAAT GGATCGACCA AAACGATGGA CAAACGATTC GTCAGCAGGA AATATATGGG
AAACACAGCA AAGCATTCTT CCAGTTATCT GCAGAGCACG AATTACCAGA TACCCAATGG
GAAACGTACC GCAAGGTAAA CGAAGCGGTT TCCATTTCCG AAGCATATCC CAAAGGTCCG
GTACACATCA ATATTCCTTT CCGCGAGCCG TTTTATCCGA AAGGCGAGAT TATGTTCTCC
GGATCACCTA CCGTTATTAA ACGGGAACAG CCGCTTCATA CATTAAGCGA CGAGCAATGG
AAAAGCATTC AGCACAAATT AGATTCGTAT AAAAAAATAC TTTTTGTCGG CGGACAACAT
CTGTACGACG AATCGCTTCG CTTAAAAATC GGTAACATCA AAGCACCATT TATTGGTGAA
GTTGTATCAA ACCTGCATGG CGTGCGCAAT GTTATACATA CGCACGACAC CTTACTTACT
TCTATCCCCT TAACCGATCT GGAAGAATTA AAACCCGACC TGGTTATCTC TTTTGGCGGC
GCATTATTAT CAAAATGGCT GAAGCAATTT ATCCGCAGCA ATGAATCCAT TGATCATTGG
TATGTAGGCC CGGATGTAAC TACACCGGAT GTATTTCAGC ACTTGTGCCA GATCATTCCG
GTACAATTAA ATGAGTTCTT ATCCAAAACA ACTATAGCTT CCAATACGCA GGAACAATTC
GTGCAACGCT GGATCCAGCA GCAGACACAT ATTATTCCGG CTATACGGGA ATTCAATACG
AAGGAAAAAG TCTTTAATGA ATTTACAGCT GTATTTGATG TCTTAAATCA TCTTCCTGCT
TTTGCCAAAC TGCATTTAGC CAACAGCATG TCGGTGCGTT ACGCAAACAC ACTTGGTATT
TCTCAGCGTA ATGCCGAAGT ATTTGCCAAC AGAGGTACCA GCGGTATAGA CGGTGTGATC
AGCACGGCTT ATGGGTATGC ATTAAAAACT TCGCAACTGG TTACAATCAT AACCGGCGAT
CTGGCATTTT TTTATGACCG CAATGCGTTC TGGAATAATT ACAAGCCATC AAACTTACGC
GTTGTATTAT TAAACAACCA CGGTGGCGGA ATCTTCCGTA TGATTGATGG CCCCTCGGCA
TTACCTGAGC TGGATGAACT TTTTGAAACA AAACAAACGT TAAGCGCAAG GTACCTTGCA
ACAGAGCATG GCCTGGAATA TACGTTGTGT AAAAACTTAA ATGGTTTGAA TCAGGCGCTT
GAAAGCTTCT TCCAGCCATC CATGTTCGGA AAGATTTTAG AAATTGAAAC AGATTCAGTA
AAAAATACTG AAGTTTTCAA ACGATTCAAA AAGACGATAC AGCAATCGTA TTTATCTTAA
|
|---|
| Protein sequence | MQAIYDIPEI LFQHGVTDVV LSPGSRCAPL SIAFSRHKKL QIKVVPDERS AAFIALGMSL
QTQKPTVLIC TSGSALYNYA PAIVEAYYQR VPLIVLSADR PPEWIDQNDG QTIRQQEIYG
KHSKAFFQLS AEHELPDTQW ETYRKVNEAV SISEAYPKGP VHINIPFREP FYPKGEIMFS
GSPTVIKREQ PLHTLSDEQW KSIQHKLDSY KKILFVGGQH LYDESLRLKI GNIKAPFIGE
VVSNLHGVRN VIHTHDTLLT SIPLTDLEEL KPDLVISFGG ALLSKWLKQF IRSNESIDHW
YVGPDVTTPD VFQHLCQIIP VQLNEFLSKT TIASNTQEQF VQRWIQQQTH IIPAIREFNT
KEKVFNEFTA VFDVLNHLPA FAKLHLANSM SVRYANTLGI SQRNAEVFAN RGTSGIDGVI
STAYGYALKT SQLVTIITGD LAFFYDRNAF WNNYKPSNLR VVLLNNHGGG IFRMIDGPSA
LPELDELFET KQTLSARYLA TEHGLEYTLC KNLNGLNQAL ESFFQPSMFG KILEIETDSV
KNTEVFKRFK KTIQQSYLS
|
|---|
| |