| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1713 |
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| Symbol | yiaD |
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| ID | 4185489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 2014128 |
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| End bp | 2016023 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638071712 |
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| Product | outer membrane protein |
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| Protein accession | YP_678322 |
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| Protein GI | 110638113 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0180372 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTGT TTAGTGTTTT TTCAGTTGCA CAAACCACTA CCTATCATAC AAAAAACAAG
AAATCAATCT CCGCGTATCA GGAAGCCGAG CTCTTACAGC AGCAGCGCAG ATGGAACGAA
GCAATCAATG TGCTTGATGC TGTTATACAA AAGGATACAG GCTTTGTAGA AGCGTATTAT
AAAGTCGGGT CTATGTACAT GGCTATGGGA AATAAAACAG CTGCAGCACG ATATTTTTGT
AAAGGAGCGG ATCTGGACCC CAGTGTTAAA GCCTTTGCCG GAGCGTATTT TACAGCAGGG
GAATTATCGT ATAATGAAGG GGAGTATGTA CGTGCGAAAC GCTATTTTGG CTATGCACTA
AATGTTCAAT CCGGCGATAA AAAAATTAAA GAGCAAACTC CTGTATATAT TGCTAAATGT
GATTTTGCAA TTGATATGAT GAAACATCCG GTAGATTTTA AACCGGTATT AATGACACCG
CCTATCAATA CTGCCTTCGC GCAGTCTCAT CCGGTACTTA CCGCGGATGG TAAAACACTT
TATTATACCA CACTATCCGG TTTATCCAGG CAGGATGATG AAAATATCGT TACTTCTTCT
TATGTAAACG GCAAATGGTC TGAACCTGTC TCCATATCCG ATAACATCAA TTCAAAAGAA
AATGAAGGAA CGTGCTCCAT CTCCATGGAT GGAAATTCCC TGGTATTTGT AGGTTGCGGC
AAAGCAGACG GATTAGGATC CTGTGATATT TACATTTCAA AAAAAGTAAA CAATGTATGG
TCTAAACCAA CAAATTTAGG GCCTGCAGTA AACAGTACTT CCTGGGATTC GCACCCGAGT
TTATCGGCAG ATGGCCGAAC CTTGTATTTT GTTTCAGCAC GTAAAGGAGG GTTTGGAAAG
GAGGATATTT ATGTGACGCA TTTGGATGAA AAGGGTATCT GGTCGCCTGC ACAAAATGCA
GGATCATCAG TAAATACAAG CGGTACAGAA TTTTCGCCAT TCATCCATGC CGACGGCACA
ACCTTGTATT TTTCATCCAA TGGTTTATTA GGCATGGGGG GGCTGGATAT TTTTTATACA
ACCGGCAACG ATACAACCTG GGCTGTACCA AAGAATATCG GTTATCCATT AAATACCTAC
GCCAATGATG AAACGTTATT CATTACCGTA GATGGCGCCA AAGGATATTA CTCCAGATTT
GATGGTACAA ATGTTAACTA CAACAGCAGA ATATTTTTGT ACGAGTTCGA TGTTCCTCAA
TCATTAAAGC CGGGCAGGAT AAGTACGTTT GCTAAAGGCC ATATTTATGA CAAGCAAACA
AAGAAGCCAT TGGGCGCACG TGTTGAATTG GTTGATATTG AAACAAACAC AGTCACACAG
GCTGTTCAGT CAGATAGTAT TACAGGTGAA TATACCATTG TTATTACAGA AGGAAAGGAG
TATGCCGTAT ATGTAAACAG AAATAAATAC TTATTCGAAT CACTGAACGT TAATTATAAA
AATCCAACGA GTTTTGATGC ACTTACATTG GATATTTATC TCACACCTAT TATATCTGGT
TCACACGTAA CACTCAATAA TATTTTCTTT CAAACCAATT CATATCAATT GGAAGAAAAA
TCAATCAGTG AATTGAAAAA GCTTATTAAT TTTATTCAGA TTAATCCCGC ACAACGCGTT
GAACTGGCCG GATACACCGA TAATGTTGGT ACAGCAGAGG CTAACCTGAA ACTGTCAGCT
ATGCGTGCAA AAGCCGTTTA TGATTATTTA ATACAACACG GAATTAAACC AGCAGGAATT
ACGTATAAAG GATATGGAGC CGCTAGTCCT GTAGCAGATA ATAATTCAGA AGAAGGGCGT
CAAAAAAACA GACGGTTGGA AATAAAAATA TTATAA
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| Protein sequence | MALFSVFSVA QTTTYHTKNK KSISAYQEAE LLQQQRRWNE AINVLDAVIQ KDTGFVEAYY
KVGSMYMAMG NKTAAARYFC KGADLDPSVK AFAGAYFTAG ELSYNEGEYV RAKRYFGYAL
NVQSGDKKIK EQTPVYIAKC DFAIDMMKHP VDFKPVLMTP PINTAFAQSH PVLTADGKTL
YYTTLSGLSR QDDENIVTSS YVNGKWSEPV SISDNINSKE NEGTCSISMD GNSLVFVGCG
KADGLGSCDI YISKKVNNVW SKPTNLGPAV NSTSWDSHPS LSADGRTLYF VSARKGGFGK
EDIYVTHLDE KGIWSPAQNA GSSVNTSGTE FSPFIHADGT TLYFSSNGLL GMGGLDIFYT
TGNDTTWAVP KNIGYPLNTY ANDETLFITV DGAKGYYSRF DGTNVNYNSR IFLYEFDVPQ
SLKPGRISTF AKGHIYDKQT KKPLGARVEL VDIETNTVTQ AVQSDSITGE YTIVITEGKE
YAVYVNRNKY LFESLNVNYK NPTSFDALTL DIYLTPIISG SHVTLNNIFF QTNSYQLEEK
SISELKKLIN FIQINPAQRV ELAGYTDNVG TAEANLKLSA MRAKAVYDYL IQHGIKPAGI
TYKGYGAASP VADNNSEEGR QKNRRLEIKI L
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