Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1683 |
Symbol | rfaQ |
ID | 4184909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 1974117 |
End bp | 1975136 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638071679 |
Product | heptosyltransferase family protein |
Protein accession | YP_678293 |
Protein GI | 110638084 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.943397 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA ACAGTATCAG ATTGGAGAAA ATACTTGTTA TTCAAACGGC ATTTATCGGT GATGCTATTT TAGCTACCGC GCTGCTGGAG TCTATTCATC AGTCGCTGCC GGATGCTGAC ATCGATATAC TGGTTCGGAA AGGGAATGAG TCGCTGTTTC AGCAGCATCC GTTTTTAAAA CAGGTATTGA TCTGGGATAA AAAACAATCA AAGTATAAAA ATCTTTTTGG CTTGCTTTCA AGCATCCGTT CTACTAAATA CGACCTGGTT ATTAATCTGC AGCGCTTTGG TGCTACCGGT TTTCTTACGG CATTTTCAGG TGCGGGCATA ACAGTAGGGT ATGATAAAAA TCCATTTTCA TTTTTATTTA CAAAGAAATT CAGTCATGAT CTGGATAAAG GGTTACATGA AGTTGACCGG AACAATACGT TGGTTTCCTG GTTTGCTTCA ACATTAAAAA GACAACCCAA ACTTTATCCG ACACAGCAAC ACTATGAACG GGTAGAAGTG CATACGCAGA AAGCATTCAT TTGTGTTGCG CCTAATTCTG TATGGTTTAC CAAGCAATAT CCGGAACATA AGTGGGTGGA ATTTTTAAAT CAGGTTCCAT CCGTGTATAC CATTTATTTA TTGGGAGCGC CGGGCGATGC GGTAAGCTGC CAACGAATAA AAGATCAGAT CATAACAGGT AATACCGTTG AGATTCTTGC CGGTAAATTA TCCTTTTTAG AATCTGCTGC ACTGATGGAA AAAGCAGCGA TGAATTATGT AAATGATTCG GCACCGATGC ATATTGCTTC CTCTATGAAT GCACCTGTTG CTGCTGTGTT TTGCTCTACC GTTCCGGGTT TTGGTTTCGG CCCGCTATCC GACAAATCAT TTAACATCGA AACGACGGAG AAACTTAGTT GCAGGCCTTG CGGGCTGCAT GGATATAAAG CGTGTCCGGA GGGGCATTTT AAATGTGCGC AGACGATCGG GAAGGAGCAG TTTTTAGAGG TTTTAAGTAA TAGGTTCTAA
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Protein sequence | MKKNSIRLEK ILVIQTAFIG DAILATALLE SIHQSLPDAD IDILVRKGNE SLFQQHPFLK QVLIWDKKQS KYKNLFGLLS SIRSTKYDLV INLQRFGATG FLTAFSGAGI TVGYDKNPFS FLFTKKFSHD LDKGLHEVDR NNTLVSWFAS TLKRQPKLYP TQQHYERVEV HTQKAFICVA PNSVWFTKQY PEHKWVEFLN QVPSVYTIYL LGAPGDAVSC QRIKDQIITG NTVEILAGKL SFLESAALME KAAMNYVNDS APMHIASSMN APVAAVFCST VPGFGFGPLS DKSFNIETTE KLSCRPCGLH GYKACPEGHF KCAQTIGKEQ FLEVLSNRF
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