| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1613 |
|---|
| Symbol | ppiA |
|---|
| ID | 4187089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 1892540 |
|---|
| End bp | 1892971 |
|---|
| Gene Length | 432 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638071606 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin-binding |
|---|
| Protein accession | YP_678223 |
|---|
| Protein GI | 110638016 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.00742073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.1669 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAG GAGAAATTCA CACCGATAAA GGTGTTATGA AAGTAGAACT ATATGATCAG
GATACACCTA TAGCGGTAGC TAACTTTGTT AAACTTGCGA AAAGCGGATT TTACGATGGC
TTAAATTTTC ACCGTGTAGT TCCTGATTTT GTGATTCAGG CTGGTTGCCC GAATGGTACT
GGCAGCGGCG GGCCGGGATA TACCATTAAA TGTGAAACAA AGAACCCGAG CCAGTATCAC
GACCGCGGTA TATTATCTAT GGCACACAGA GGAAAAGATA CAGGTGGTTC ACAATTCTTT
ATTTGCCACA ACCGTAAAAG AACAGCCGGG CTGGATGGTT TACATACCTG CTTTGGTAAA
GTAACCAAAG GTCTTGAAAT TGTGGATCTG ATCAGAGAAG GTGATAAAAT CCAGAAGATC
GTGATCAACT GA
|
|---|
| Protein sequence | MTTGEIHTDK GVMKVELYDQ DTPIAVANFV KLAKSGFYDG LNFHRVVPDF VIQAGCPNGT
GSGGPGYTIK CETKNPSQYH DRGILSMAHR GKDTGGSQFF ICHNRKRTAG LDGLHTCFGK
VTKGLEIVDL IREGDKIQKI VIN
|
|---|
| |