| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1387 |
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| Symbol | rfaD |
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| ID | 4185283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1608201 |
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| End bp | 1609166 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638071380 |
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| Product | ADP-glyceromanno-heptose 6-epimerase precursor |
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| Protein accession | YP_677998 |
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| Protein GI | 110637791 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATGGTTG TTACAGGTGC GGCTGGATTT ATCGGAAGCT GCTTAATTCA ACGCTTAAAT
GAGTTGAATT TTAATTTTAT CGTTGCAGTA GATCATTTTG AAAATCCCGA AAAGAAAAAG
AATCTGGAAA ATAAAAAGAT TCAGGAGTAT GTGGACCGTG ATGATTTTTT CGATTGGCTG
GATAAAAACA ACAAACATGT TGAATTCATC TTTCATATAG GCGCACGCAC TGATACAACT
GAATTCGACA AAGCAATCTT TGACAGACTG AATGTTGCCT ATTCAAAAAA CATGTGGAAC
GCCTGTATCA AGTATCAGAT ACCCCTTGTC TATGCTTCTT CTGCTGCAAC GTATGGTAAT
GGTGAGTTTG GCTACGATGA TAATGAGCAG AAAATCCCGC AATTAAAACC ATTGAATCCA
TATGGTGATT CTAAAAATGA TTTTGATATC TGGGCATTAC AACAGGAGAA ACAACCATTC
TTCTGGGCAG GCTTAAAATT CTTTAACGTT TACGGACCGA ATGAATATCA TAAAAGCAGA
ATGGCTTCGG TGATCTTCCA TGCGTTTCAT CAGATAAAAA ATTCCGGAAA GATGAAATTG
TTCCGTTCAC ACAAAGCAGA ATATACAGAT GGCGGACAGA TGCGTGACTT TGTGTATGTG
AAAGATGTCT GCAACGTAAT CATCTTCCTG ATGAATCACC GCAAAAACAG CGGCATCTAT
AACTTAGGAA GCGGTACAGC CAGAACATTC CTTGATCTTG CCAAAAATAC GTTTAAAAAT
ATGGAGGTAA CGGAAAATAT TTCTTTCATT GATACGCCCA TAGATATCCG TGATAAATAT
CAATACTTTA CAGAAGCCAA TATGGGCAAA CTTAAAAGCA TTGGCTATAC GGATACATTC
CATACCCTGG AAGAAGGTAT TAAAGATTAT GTAAAAAATT ACCTGATACC AAATAAATAC
TGGTAG
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| Protein sequence | MMVVTGAAGF IGSCLIQRLN ELNFNFIVAV DHFENPEKKK NLENKKIQEY VDRDDFFDWL
DKNNKHVEFI FHIGARTDTT EFDKAIFDRL NVAYSKNMWN ACIKYQIPLV YASSAATYGN
GEFGYDDNEQ KIPQLKPLNP YGDSKNDFDI WALQQEKQPF FWAGLKFFNV YGPNEYHKSR
MASVIFHAFH QIKNSGKMKL FRSHKAEYTD GGQMRDFVYV KDVCNVIIFL MNHRKNSGIY
NLGSGTARTF LDLAKNTFKN MEVTENISFI DTPIDIRDKY QYFTEANMGK LKSIGYTDTF
HTLEEGIKDY VKNYLIPNKY W
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