Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1332 |
Symbol | nirB |
ID | 4185837 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | - |
Start bp | 1546940 |
End bp | 1549453 |
Gene Length | 2514 bp |
Protein Length | 837 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638071326 |
Product | assimilatory nitrite reductase (NAD(P)H) large subunit precursor |
Protein accession | YP_677944 |
Protein GI | 110637737 |
COG category | [C] Energy production and conversion |
COG ID | [COG1251] NAD(P)H-nitrite reductase |
TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0149274 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAACG AAACGCACAT ACTGGTTGTA GGCAATGGAA TGGTTGGCTA CAAGTTCTGC GAAAAGCTGA AGAAAAAAGA TTCTTCTGGA AACTTCACCA TTACCGTACT TGGAGAAGAA CCAAGACCAG CCTATGACCG GGTTCACTTA AGTGAATACT TCAGCACACG TTCTGCAGAT CATTTAACAA TGGCTCCGAA AGAATGGTAT GCGGCAAACA ACATTAACCT TGTGTTAGGT AATCCGGTTG TATCTATAGA TCGGGAACAG AAATCTGTTA CTACCTTTTC AGGTGCTGTC TATACGTATG ATAAATTAAT ACTTGCCACC GGGTCTGCTG CTTTTGTTCC ACCTATTAAA GGTGTTGAGA AAGACGGCAT CTTTGTATAC CGCACGATTG AAGATCTGGA GATGATGATC AAGCAGGCGG AAAAATCAAA GGTGGGTGCT GTAATCGGCG GCGGCTTATT AGGTCTGGAA GCTGCGAAAG CCTTACTGGA CTTAGGATTG AAGCCCCATG TGATCGAGTT TGCGCCGCGG TTAATGCCTC GTCAGCTGGA TGAGGCCGGT TCTAAAATAC TTCAGCAAAA ATTAGAATCA CTCGGTTTAT CCATTCACTT AAATAAAACA ACTTCGTACT TCGATGGTGA TGCAGCAGTA ACAGCTATGC AGTTTGCTGA TGATACGCGT CTGGAATTGG ATATGGTTGT AATTTCTGCC GGGATTAAAC CAAGAGACGA AATTGCTAAG AAAGCAGGTT TAACGGTAGG TCCCAGAGGT GGTATTGAAG TAAATGATGC ACTTCAGACA TCTGACCCGA ACATTTATGC CATTGGTGAA TGTGCTTTGC ATTGGGGTAT GATCTATGGA TTGGTTGCAC CGGGTTATGA AATGGCTGAA GTAGTGGCGG AGAATCTGAT CCATGAACAC AGCAAAGCAT TCAGATCGTT TGATATGTCT ACCAAATTGA AATTAATTGG TGTAGATGTT GCAAGCTTTG GTGATGCATT TGGTACCGAA GAAGGTTCTG TTACAATTAC ATATGAAAAT AAAGACAAAG GAATTTACAA GCGTTTAAAT TTATCTGCCG ATAAAAAACG TGTTATAGGT GGGATATTAG TGGGTGATGC TGAAAGCTAT AACATGTTGC TGCAGATGGT TACTAACAAG ATGGCTTTAC CACCGGACCC GGAAGATCTG ATTCTGGGCT CCCGTGGTGA AGGCAGGTCT GAAGGAGGTA ATGCAGGCGT GATGAGCCTC CCCGATGAAG CATTGATCTG TTCATGCGAA GGTGTTACGA AAGGCATGAT CTGCTGCGCG GTAACGGATC AACACGTAAC AGATCTTCCG GGCATGAAAA AATGTACCAA AGCCGGAACA GGCTGCGGTG GCTGTGTGCC GATGGTGAAT GATTTAATTT CCGAGACATT AAAATCTCAA GGCAAGGTGA TTAAAAAAGT GCTCTGCGAA CACTTTGATT ATTCCCGTCA GGAATTATTG GATCTGATAA AGATCAATGA ATATAAAAGT TACGATGTTA TTCTCAATGA AGCTGGAAAA GGCGATGGCT GCGAGATCTG TAAACCGGCA ATCGGTTCAA TCTTAGCAAG TGTCTGGAAT GAAGTTATTT TAAAACAGGC CACGATACAG GACTCAAACG ACCGCTTTTT AGCCAACCTG CAGAAAGGCG GTACTTACTC GGTTGTACCA CGTGTGGCAG GCGGAGAAAT AACGGCAGAT AAACTCATTG TACTGGGTGA AGTAGCGAAG AAATACGATC TCTATTGTAA AATTACCGGC GGACAGCGGA TCGACTTGTT CGGTGCGCCG GTTCATCAAT TGCCGGATAT CTGGGAAGAA CTGATCCATG CGGGTTTTGA AAGCGGACAT GCATACGGTA AATCATTGCG TACGGTAAAA AGTTGTGTCG GGTCAACGTG GTGCAGGTTT GGCGTACAGG ATGCTGTTTC TTATGCGATC CGCATTGAAG ACCGGTACAA AGGTATCCGA TCTCCGCATA AAGTAAAGAT GGCTGTATCG GGTTGTGTAC GTGAATGCGC AGAAGCTCAA AGCAAAGACT TTGGCATCAT TGCTACCGAT AAGGGATGGA ACTTATATGT ATGCGGCAAC GGTGGTGCAA AACCTCAGCA CGCACTATTA TTTGCTTCAG ACCTGGATGA TGAAACATGC ATCCGATACA TAGACCGTAT CATGATATTC TATATCCGCA CGGCAGAACC ATTAATGCGC ACAGCAACAT GGTTAAATAA ATTAGAAGGC GGCATGGATT ATTTGCGCGA TGTAATTATC AACGATAGTC TTGGTATGTG CAGCCAGTTT GAGAAAGAAC TGCAACTGCT TGTTGATACT TATCATTGTG AATGGAAAGA AGTTGTTGAA AATCCGGAAT TAAGAAAACG TTTTAACACA TTCATTAATT CAGAAGAAGC AGATGAAACA ATGGCATTTG TAGAAATGCG TACACAAAAA AAACCAGCAA ACTGGAAAGC GTAA
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Protein sequence | MKNETHILVV GNGMVGYKFC EKLKKKDSSG NFTITVLGEE PRPAYDRVHL SEYFSTRSAD HLTMAPKEWY AANNINLVLG NPVVSIDREQ KSVTTFSGAV YTYDKLILAT GSAAFVPPIK GVEKDGIFVY RTIEDLEMMI KQAEKSKVGA VIGGGLLGLE AAKALLDLGL KPHVIEFAPR LMPRQLDEAG SKILQQKLES LGLSIHLNKT TSYFDGDAAV TAMQFADDTR LELDMVVISA GIKPRDEIAK KAGLTVGPRG GIEVNDALQT SDPNIYAIGE CALHWGMIYG LVAPGYEMAE VVAENLIHEH SKAFRSFDMS TKLKLIGVDV ASFGDAFGTE EGSVTITYEN KDKGIYKRLN LSADKKRVIG GILVGDAESY NMLLQMVTNK MALPPDPEDL ILGSRGEGRS EGGNAGVMSL PDEALICSCE GVTKGMICCA VTDQHVTDLP GMKKCTKAGT GCGGCVPMVN DLISETLKSQ GKVIKKVLCE HFDYSRQELL DLIKINEYKS YDVILNEAGK GDGCEICKPA IGSILASVWN EVILKQATIQ DSNDRFLANL QKGGTYSVVP RVAGGEITAD KLIVLGEVAK KYDLYCKITG GQRIDLFGAP VHQLPDIWEE LIHAGFESGH AYGKSLRTVK SCVGSTWCRF GVQDAVSYAI RIEDRYKGIR SPHKVKMAVS GCVRECAEAQ SKDFGIIATD KGWNLYVCGN GGAKPQHALL FASDLDDETC IRYIDRIMIF YIRTAEPLMR TATWLNKLEG GMDYLRDVII NDSLGMCSQF EKELQLLVDT YHCEWKEVVE NPELRKRFNT FINSEEADET MAFVEMRTQK KPANWKA
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