Gene CHU_1320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1320 
SymbolnapA 
ID4186130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1533598 
End bp1537128 
Gene Length3531 bp 
Protein Length1176 aa 
Translation table11 
GC content43% 
IMG OID638071314 
Productperiplasmic nitrate reductase/nitrite reductase 
Protein accessionYP_677932 
Protein GI110637725 
COG category[C] Energy production and conversion
[R] General function prediction only 
COG ID[COG1251] NAD(P)H-nitrite reductase
[COG3383] Uncharacterized anaerobic dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0472235 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCAAT CTACAAAAAC ATATACCTCA ACCTGCTCGT ATTGCGGTGT TGGTTGTGGT 
GTTAAAATTC ACAAAGCGGT TAATGGCAGT CTTCAGATAG AAGGCGATAA ATCGTATCCT
GCAAACCAGG GCATGCTGTG TTCAAAAGGC ATGAACTTAC ATTATGCCGC CATGGATCAG
ACAGACCGTT TGTTATATCC TGAAATGCGT GGAAACAGAA ACATGCCGTT GCAGCGTGTT
TCCTGGGATA CCGCGCTGGA TAGAGCTGCT GCAGTATTCA AAGCATTGAT CGAAAAATAT
GGTCCGGATT CAGTGGGATA CTATGTGTCC GGACAATGTT TAACAGAAGA ATATTATATC
GCAAATAAAA TCACCAAAGG TTTTATTGGT ACCAATAACA TAGACACTAA TTCCAGGTTG
TGCATGAGCT CGGCGGTGGT AGGGTATAAG CTTGCCTTGG GCGAAGACTC TGTACCGCTG
AGTTATGACG ATATTGAACT GGCAGACTGC TTTTTTATAA CAGGAGCAAA CCCGGCCTGG
TGTCACCCGA TTTTATTCCG CCGTCTGGAA AATCATAAAG CGGCCAACCC GCATGTGAAG
ATCATCGTTG CTGATCCGCG CAAAACGCAA TCCTGTTCCT TGGCAGATGT GCATTTGCAA
TTACAGCCGG GCACAGACAT TGTATTGTGT CATGCGATTG CACGCCGGTT AATTGAAACA
GGAAAGATCG ATCAGGCTTT TATTGATGCC CATACCAGCG GATATGAAGC ATTCAAAGAA
AAAGTTTTTA CGTTAAGCCT TCAGGAAGCG GCTGATATCT GTGTATTGGA AAAAGAACTG
ATCATTCAGG CAGCAGATAT GATCGGCGAT TCCCAGGCCT TTATCAGCAT GTGGGCGATG
GGCCTGAATC AAAGTGTTAT TGGTGTAAAT AAAAATGTTT CACTTCTGAA TTTATCGTTA
ATAACAGGGC AGATTGGCAA GCCGGGCGCA GGACCGTTGT CTTTAACCGG ACAACCGAAT
GCGATGGGTG GAAGAGAAGT TGGCGGCTTG TCCAATATGT TACCTGCACA TAAAAACTTA
TTAAATCCAG CACACAGAAA GGAAGTAGCA GATTTCTGGG GTGTACCTGC TATCAATGAA
AAGCCTGGAT TTACTGCTAC AGAAATGTTT GATCAGCTGC TTTCCGGAAA AATGAAAGCT
GTATGGATCA TTTGTACAAA CCCATTGGTG AGTCTGCCCG ATGCACGAAA TGCAGAAGCT
GCGTTGCGTA ACGCACGTTT TGTTGTTGTG CAGGATATTT CAAATAAATC CGACACGTTG
AAATATGCAG ACCTGGTGCT GCCTGCTGCT GCGTATATGG AGAAGGAAGG CGTGATGACA
AATTCCGACC GGCGGATAAG TTATCTTTCC AAAGTAATGG AGCCGCCGGG TGAAGCCTTG
CCCGATGTTG ACATTCTGTG CCGGTTTGCA CACAAGATGG GCTGGAAAGA ATCATTTAAT
TATGCATCCA ATGCAGAAAT ATTTGAAGAA TATACGCGTA TCACCAAAGG TACGAATATT
GATATAAGCG GTTTGTCGTA TGCAGACCTG ATTCAGCGGA GAAGCGTACA ATGGCCCGTT
CCGGAAAAAG GTCATCCGGG TACACCGCGT TTATTTACCG ATCATACATT TTATACACCT
ACCGGTTTAG CCAATATTAT TTCAGTGGAT TCTATGAATC ACTCTGAAAA ACTGGATGAT
GATTTTCCGC TGATCCTTAC AACGGGACGC ATCCGTGATC AATGGCATAC CATGACACGT
ACGGGTAAAG TACGTAAATT GAACAAGCAC ATTTCAAAAC CCTTTCTGGA AATCCATCCG
GAAGATGCCG GAATAAGAGG AATTAAACAG GATGATGTTG TTACGATAGA AAGCAGAAGA
GGGGATGTAC GGGTAACAGC TATTCTTACC GAAGATATAA AAAAAGGCGT AGTGTTTTTA
CCCATGCATT GGGGAAGGAT GTTAAGCACA GACCTGACGC GTACAAACAA TGTAACCAAT
AATTTAATTG ATCCGGTTTC TAAAGAGCCG GACTATAAAT TCACAGCGGT GCAGGTTACA
AAATATGTAA AACCGCGGGA ACATATTGTT ATTGTTGGTG CCGGTGCTGC TTCGTGTCAG
TTTATCAAAC GCCATCGTGA ATTAGGTGCG GAAGATACAA TAACAGTTTT CAGCGCAGAA
AATTTTCATT TTTATAACAG AGTTTTATTG CCGGAATATG TAAGCAAACA TAAAAGCTGG
GATAATTTAG AAAAGCTGCG TAAAGCAGAA TGGCTGGAGT TGGGTGTAAC CCTGATTCCA
CGGAAAATAA CCAGGCTGAT CACAGAATCA AAATCGATTG TTGATGATAC CGGAGAAGTA
CATTGTTACG ATCGCTTACT GGTAGCAACC GGAAGCCGGT CCACACAGAT GAAACATATT
GCTCCGGTTA AAGGCATCTT TACCATGAGA AGGAGAGAAG ATGCAGATGC ATTGATTCAT
CATCTTTCTA CGGGAGACTC TGTTGTTGTT GTTGGTGGTG GTTTGCTGGG TTTAGAGATG
GCCGACTCCC TGCTAGAAAT TGGTATGAAG GTTTCTGTTA TTCAGCGTTC ATCCAGGTTA
ATGGACCGGC AGCTGGATAA GACAGCAGCC AATCTGTTAG CGAAAGAGTT AACAGAACGG
GGCATGGATC TGTACTTTGA TGATGAAGTA TTGTATGTAA ACGGTGAATA TGCAGTTGAA
AGTCTGCGTT TGAAAAGCAG TCGCAAGATT GATTGCAAAG CTATTCTGTT TGCGATTGGT
ACGCAACCCA ATGTAGAGTT TCTGAAAGAG GCCGGGATAC AGGTAAACAG AGGAGTGATC
GTGGATGAGC ATTTACAGAC ATCGAATGAA TTTGTATATG CAATGGGTGA AATTGCAGAA
CGTAATGGAG CGTTATTTGG TATCACTGCC GGTGCAGAAG AACAGGCTAC TGTTCTTGCT
GAATATCTGA ATGGAAGTAC TACTTCAAAT TATACCGGTA CGTTAAGTAT GAACATACTG
AAAGTACACG GGGTTGAGTT ATGTTCCATT GGTATGGTTG AAGCACCTCC TAATAATCCG
GATTATGAAG AAATTATTTT CCTTGACAAA ACACGAAAGT ATTATAAAAA ATGTATTGTG
TATCAGGACC GTCTTGTTGG TGCAATTCTG ATGGGAGATA AATCTGAGTT TAATGAATTC
AGAGACTGGA TAAAGTCTGG CGTAGAACTT GGTGAAAAGC GCGAAAGCCT GTTGATGTCC
GGGAGCATAT CAAAAGAACC GATGCTGGGA ACGCTGGTTT GTTCCTGCAA TACTGTTGGC
AGTGGGAATA TTGAAAATGC CATCAAAGGC GGCTGTAAGG ATGTGACTTC CATTTGTAAT
ACGACCGGAG CCGGTACTGG CTGCGGCAGC TGCAAGCCGG AAGTTAAAGC AATATTGGAG
CGTATGCATG CAGTAACAGA ATCATCTAAC TCACAAAAAA CGTATGCCTA A
 
Protein sequence
MSQSTKTYTS TCSYCGVGCG VKIHKAVNGS LQIEGDKSYP ANQGMLCSKG MNLHYAAMDQ 
TDRLLYPEMR GNRNMPLQRV SWDTALDRAA AVFKALIEKY GPDSVGYYVS GQCLTEEYYI
ANKITKGFIG TNNIDTNSRL CMSSAVVGYK LALGEDSVPL SYDDIELADC FFITGANPAW
CHPILFRRLE NHKAANPHVK IIVADPRKTQ SCSLADVHLQ LQPGTDIVLC HAIARRLIET
GKIDQAFIDA HTSGYEAFKE KVFTLSLQEA ADICVLEKEL IIQAADMIGD SQAFISMWAM
GLNQSVIGVN KNVSLLNLSL ITGQIGKPGA GPLSLTGQPN AMGGREVGGL SNMLPAHKNL
LNPAHRKEVA DFWGVPAINE KPGFTATEMF DQLLSGKMKA VWIICTNPLV SLPDARNAEA
ALRNARFVVV QDISNKSDTL KYADLVLPAA AYMEKEGVMT NSDRRISYLS KVMEPPGEAL
PDVDILCRFA HKMGWKESFN YASNAEIFEE YTRITKGTNI DISGLSYADL IQRRSVQWPV
PEKGHPGTPR LFTDHTFYTP TGLANIISVD SMNHSEKLDD DFPLILTTGR IRDQWHTMTR
TGKVRKLNKH ISKPFLEIHP EDAGIRGIKQ DDVVTIESRR GDVRVTAILT EDIKKGVVFL
PMHWGRMLST DLTRTNNVTN NLIDPVSKEP DYKFTAVQVT KYVKPREHIV IVGAGAASCQ
FIKRHRELGA EDTITVFSAE NFHFYNRVLL PEYVSKHKSW DNLEKLRKAE WLELGVTLIP
RKITRLITES KSIVDDTGEV HCYDRLLVAT GSRSTQMKHI APVKGIFTMR RREDADALIH
HLSTGDSVVV VGGGLLGLEM ADSLLEIGMK VSVIQRSSRL MDRQLDKTAA NLLAKELTER
GMDLYFDDEV LYVNGEYAVE SLRLKSSRKI DCKAILFAIG TQPNVEFLKE AGIQVNRGVI
VDEHLQTSNE FVYAMGEIAE RNGALFGITA GAEEQATVLA EYLNGSTTSN YTGTLSMNIL
KVHGVELCSI GMVEAPPNNP DYEEIIFLDK TRKYYKKCIV YQDRLVGAIL MGDKSEFNEF
RDWIKSGVEL GEKRESLLMS GSISKEPMLG TLVCSCNTVG SGNIENAIKG GCKDVTSICN
TTGAGTGCGS CKPEVKAILE RMHAVTESSN SQKTYA