| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1313 |
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| Symbol | ligA |
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| ID | 4186123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 1524308 |
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| End bp | 1526320 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638071307 |
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| Product | DNA ligase |
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| Protein accession | YP_677925 |
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| Protein GI | 110637718 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.269353 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGACG CGCAGGCATT GGCACGTATT GAAGAATTAA ACAAAGTCCT TCATTACCAC
AACAATCTAT ATTATCAGAA AGACACGACA GAAATTTCAG ATTTTGAATT CGACACATTA
TTACAGGAAT TAATTGAACT TGAAAAGCAA TTTCCGCTGT ATCTGAAAGC TGATTCCCCT
TCGCAGCGTG TCGGCGGAAC CGTTACCAAA GAATTTGCTT CCATCAGTCA TAAATACCCG
ATGCTTTCAC TTTCCAACAC CTATTCGGAA GAGGAGATCC GGGAGTTTGA TGAGCGTGTA
CAAAAAGCTG TTGGCCATGC AGTAGAATAT GTGTGTGAAA TGAAATTTGA TGGGGTTGCC
ATAAGCATCA CCTATAAGAA CGGTATGATT GCGCAGGCCG TTACCCGCGG GGATGGTGTG
CGCGGCGACG ATGTTACCAA TAACATTAAA ACCATTAAAA GTATTCCGTT AAAAATTCAA
TCGGCAACGT TTCCGGAAGA ATTTGAAGTA CGGGGCGAAG TATATCTGCC GTATGAAATG
TTTGAACGTA TCAATCAGGA ACGTGAAGAC ATTGGAGAAG CGGCATTGGC CAATCCGCGC
AATGCAGCAA GCGGTACGGT TAAAATGCAG GATTCGGGTA TTGTTGCCAA ACGGGCACTG
GATTGTTTTA TCTATTCACT CCTGCAGGAT TCGAATAAAC AGCCAACGCA TGCTGCTGCG
CTGGCACAAT TAAAAGAATG GGGATTCAGA GTATCGGATT CGTACAAAGT CTGTAAAAAC
GTAGATGAAA TTATACAGTA TATCAATCAC TGGAGCGAGG AACGTTTTAA ACTTCCGCTG
GCAACGGATG GTATTGTGAT CAAGGTGAAT GATCTGCGGC TGCAATCAGA GCTGGGCATG
ACGGCTAAAA GTCCGCGTTG GGCCATTGCT TATAAATTCA AAGCAGAAGA AGCTTCCACT
CCCATCCTGT CGGTTGAATA TCAGGTGGGC CGTACCGGAG CCGTAACACC TGTTGCCAAT
CTGGCGCCGG TGCATCTGGC AGGAACAACG GTGAAACGTG CTACACTGCA TAATGCCAAC
GAAATGGAGC GTTTGAATTT ACACATAGGT GATACGGTTT TTGTTGAAAA AGGCGGAGAA
ATCATCCCGA AGATTACCCG TGTGGATGTT TCAAAACGGA TTGCAGGAAG CCAAATGATT
CCGTTTATTC AGAACTGCCC CGTGTGCGAT ACCAAACTGA TCCGTATTGA AGGCGAAGCT
GCCTGGTATT GTCCGAATGA CAAAGGCTGC GCGCCACAGA TCACGGGCAA GATCGAACAT
TTTATTCAGC GCAAAGCAAT GAACATTGAT GGTATCGGTT CAGAAACCAT TGAACTGCTG
TACCAAAAGA AGCTGATCCG CAATGTTGCA GATCTGTATA CATTAACATA CGATCAACTC
ATTCAATTAG ACCGATTTGG AGAAAAGTCT GTAACCAATG TATTGAATGG CATAGAAGCA
TCCAAACAAA CACCTTTTAA AAGCGTGTTG TTTGCCATTG GTATACGTTA TGTAGGTTCA
ACCGTAGCGG AGAAGCTGGC GCTGCATTTT AAGAGCATTA ACGCATTGGA GAAAGCCAGT
ATAGAAGAAT TACTGCAGGC GCCTGAAATA GGAATTAAAA TAGCGCAGAG CATTATTGAA
TGGTTCTCTG TTGATACAAA TGTTCAACTA ATAGAAGACC TGAAAAAAGC AGGTGTAAAA
CTGGAATTAA GCGAACATGA AATTCTGAAA CCGGAGTCGG ATAAATTTGC CGGCAAAAGT
TTTGTCATTT CAGGCGTATT TGAAAACTAT GAACGGGATG AATTGAAAGA TCTCATCTTA
AAAAATGGGG GTAAAATCAG TTCAGGAATT ACGGGTAAAC TCAACTATCT GGTAGCCGGA
GAGAATATGG GACCTGCCAA ATTAGAAAAA GCGCAGAAAC TAAACATAAC TATTCTTTCA
GAGGCAGAAT TTATTTCACT CTTAAATTCA TGA
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| Protein sequence | MNDAQALARI EELNKVLHYH NNLYYQKDTT EISDFEFDTL LQELIELEKQ FPLYLKADSP
SQRVGGTVTK EFASISHKYP MLSLSNTYSE EEIREFDERV QKAVGHAVEY VCEMKFDGVA
ISITYKNGMI AQAVTRGDGV RGDDVTNNIK TIKSIPLKIQ SATFPEEFEV RGEVYLPYEM
FERINQERED IGEAALANPR NAASGTVKMQ DSGIVAKRAL DCFIYSLLQD SNKQPTHAAA
LAQLKEWGFR VSDSYKVCKN VDEIIQYINH WSEERFKLPL ATDGIVIKVN DLRLQSELGM
TAKSPRWAIA YKFKAEEAST PILSVEYQVG RTGAVTPVAN LAPVHLAGTT VKRATLHNAN
EMERLNLHIG DTVFVEKGGE IIPKITRVDV SKRIAGSQMI PFIQNCPVCD TKLIRIEGEA
AWYCPNDKGC APQITGKIEH FIQRKAMNID GIGSETIELL YQKKLIRNVA DLYTLTYDQL
IQLDRFGEKS VTNVLNGIEA SKQTPFKSVL FAIGIRYVGS TVAEKLALHF KSINALEKAS
IEELLQAPEI GIKIAQSIIE WFSVDTNVQL IEDLKKAGVK LELSEHEILK PESDKFAGKS
FVISGVFENY ERDELKDLIL KNGGKISSGI TGKLNYLVAG ENMGPAKLEK AQKLNITILS
EAEFISLLNS
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