| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_1235 |
|---|
| Symbol | |
|---|
| ID | 4187026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 1426815 |
|---|
| End bp | 1428335 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638071230 |
|---|
| Product | phytochrome-like protein |
|---|
| Protein accession | YP_677848 |
|---|
| Protein GI | 110637641 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAAC AAAATTACGA TTCGAAATTC TGCGGAAGTC TGCCAATAAG TTTTGTTAAC
CAGATTCAGG ATTATGGTTT TTTACTTGTG TGTGATCCTG CACTTATTGT TTTGCAGGTA
AGTGATAATG CAGAAGCTTT CACCCGTATT TCCTACCAAT CATTTATAGA TAAAAATCTG
AAGGAACTTC TTACTGCAGA TTCGTTTCAG CTGCTTCAGG AAAAGCTTTC ATCCAAGGCC
CAGAAGCGTT TTACCTGTAC GCTTGAATTT TACGGAGGTG TGCGGACATC TTTCCTGACC
TTGATTCATG TAAAAGAAGA ATATATTCTC TTCGAGTTTG AGCCATCGGA TGATACCGAT
ATAAAAGGCT TCCGGGAAGT TTACCAGCAG ATCCATGAAG CATCTGCTGC CATTCAGCAG
AGCCAGGAAC TGGGCGAATC GCTTTCCATT GCTGTAAAAG AGCTGAAAAC ATTTTCGGGT
TTTGATAAGG TCATGATTTA TAAGTTTGAT GAAGACTGGA ACGGGCATGT ACTGGCAGAG
GCAATGGAGC CCGGTATGGA ATCTTACCTG GGGATCACAT TCCCAGCTTC AGATATTCCT
AAGCAGGCGC GCGAACTTTA CCTGAAAAAT CCATACCGGC TTATCCCGGA CAGGGAGTAT
AAGCCTTCGA AGCTGTATCC GGTAATTAAT CCGGCCAGCA GCGGTTTTGT AGATCTGGGT
GTGTGTAATC TGCGCGGGGT GATCAAAGTG CATCTGGAAT ATCTGACAAA CATGAACGTG
AAATCTTCTA TGTCGACACG TATTCTGAAA GACAATACAC TCTGGGGACT GATCGCGTGC
CACCACCGTG AAAAGAAATT TCTGAATTTT GATCAGTGTT CGGTATTTGA AATGTTTTCA
AATGTTGTTT CTACGCGTCT TTCCGCACTT GAGACCGAAC AGAACCTGAC AAAGACAACG
GAAAACCAGG CCCTGATGAA TTCGATCATT GAAGAGCTCT ATTCACAGAC GATGCTGATC
AATGCCATTG ATAATTGTGC AGCTTTAATC ATGCAGCTGC TGGATTGCAC CGGATTGGTG
CATATACGTG AATCTAAGGT GAAATCATTC GGTGCCTGTC CGTCTGCATC CTCTATTCAT
GAACTGGTAA TCTGGCTGCA GATGAAAAAT TTTACAACGT TATACGCTAC CGCCGCATTA
ACCGAAGCGT ATGAAGATGC AGCAGCCATA GCTTCCGTAG CCAGCGGCTT GCTGGCGTTT
CCGGTCATTC CCGATAAAGG TGAATATATA TTGTGTTTCC GTGCAGAGAT CCTGCAGCGT
ATCGATTGGG GCGGGAATCC GAACGAAGCG ATCCGGTTCA ACGAAGATAT GAAAACCTAT
CATCCGCGGC ATTCCTTTGA GATATGGAAG GAAGAGATCA AAAGCACAAG TCAGCCTTTT
CAGGAATATG AAATGAATTT TGCAAAAGAG CTGCAGCGTA TCTTTATTGA AACGCGGTTG
AAAGAACAAA ACAGACGATA G
|
|---|
| Protein sequence | MSKQNYDSKF CGSLPISFVN QIQDYGFLLV CDPALIVLQV SDNAEAFTRI SYQSFIDKNL
KELLTADSFQ LLQEKLSSKA QKRFTCTLEF YGGVRTSFLT LIHVKEEYIL FEFEPSDDTD
IKGFREVYQQ IHEASAAIQQ SQELGESLSI AVKELKTFSG FDKVMIYKFD EDWNGHVLAE
AMEPGMESYL GITFPASDIP KQARELYLKN PYRLIPDREY KPSKLYPVIN PASSGFVDLG
VCNLRGVIKV HLEYLTNMNV KSSMSTRILK DNTLWGLIAC HHREKKFLNF DQCSVFEMFS
NVVSTRLSAL ETEQNLTKTT ENQALMNSII EELYSQTMLI NAIDNCAALI MQLLDCTGLV
HIRESKVKSF GACPSASSIH ELVIWLQMKN FTTLYATAAL TEAYEDAAAI ASVASGLLAF
PVIPDKGEYI LCFRAEILQR IDWGGNPNEA IRFNEDMKTY HPRHSFEIWK EEIKSTSQPF
QEYEMNFAKE LQRIFIETRL KEQNRR
|
|---|
| |