Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_1199 |
Symbol | yggB |
ID | 4185354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 1378826 |
End bp | 1379671 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638071196 |
Product | mechanosensitive ion channel component |
Protein accession | YP_677814 |
Protein GI | 110637607 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00000786613 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACAAATA CCCATATGCC CGAATTAGCA AAACCTGAAT TTGTTTCAGT AGATCATTTA AAAAGTGTTA CCGACAGCAT TATTTCATAT CTGCCTACAC TGGCGTATAG TTTAGCCGTT CTGTTTGTTG GCTTCTGGTT AGCGAAACGA CTGGATAAAG GTTTAGCAAA ATATTTTAAT AAGCGTAACT ACGATGTTTC GCTGGAAGGT TTTATCCGCA GCCTGGTAAG TGTGGGCCTC AAGATCATTA TTGTACTTAC GTTTGCCGGT ATGATCGGTT TGCCCACAAC CTCTCTGCTT GCGGTATTTG GTGCTGCGGG TCTGGCGGTA GGTCTGGCAC TTCAGGGCTC ATTGGCAAAC TTTGCTGGTG GCGTGTTAAT CCTGATCTTT AAACCGTTCA AAGTAGGCGA TGTAATCAGC ACACAAGGCG AAACAGGAGA GGTGCAGGAG ATTCAGATCT TCAATACGAT TTTATTGACA CCGGAAAATA AAACGGTTAT CCTTGCCAAC GGTTCTGTTT CAAACGGAAC AATTGTGAAT GTAACCCGTC ACGGTAATTT AAGAGCAAGC TTACGTATCG CGATTGATTT TTCAGAAGAT CTAGACCATG TACGAAGCAT TATCATGGGT GTATTACAGA ATGAACCCCT GGTTCTAAAA ACACCAGAGC CGTCTGTAAT TGTAGTAGAA TATGCAGAAA GCGCAATTGT ATTATCCGTA AGACCGTATG CAAATGTAGC TGATTTTGGT CCGATGCAGA CAGCCGTATA CGAAAAGATC CGCAAGGAAT TCATCGCACA CGAAGTTAAA AGCCCGGAAA TCAAACGCAC ATACGTACAA CCGTAG
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Protein sequence | MTNTHMPELA KPEFVSVDHL KSVTDSIISY LPTLAYSLAV LFVGFWLAKR LDKGLAKYFN KRNYDVSLEG FIRSLVSVGL KIIIVLTFAG MIGLPTTSLL AVFGAAGLAV GLALQGSLAN FAGGVLILIF KPFKVGDVIS TQGETGEVQE IQIFNTILLT PENKTVILAN GSVSNGTIVN VTRHGNLRAS LRIAIDFSED LDHVRSIIMG VLQNEPLVLK TPEPSVIVVE YAESAIVLSV RPYANVADFG PMQTAVYEKI RKEFIAHEVK SPEIKRTYVQ P
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