| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0733 |
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| Symbol | yncD |
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| ID | 4185677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 828819 |
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| End bp | 830861 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638070739 |
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| Product | tonB-dependent receptor |
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| Protein accession | YP_677360 |
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| Protein GI | 110637153 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTAAGA ATGCATTCAC CTGTTTTGTT TTAACCATTG CTTTTTATTC TACGCTAAAA
AGCCAGGCAC AGATCATAGA TACTGTTGCT GTTTATGAAG ACAAGGAAAT TGAATTCCGT
TTTTTAAATT TAAAACAATC TCCTGCCAGT GTTGATTCTA TTCAGCCTGC CAGTCATCAG
CCAGCATTTA CGCTTGTTCC TGCTTTGAAT ACCTTGCCGG GTGTGCGCAT GGAAGAACGG
TCACCCGGAA GCTACCGCTT GTCTATCCGC GGCAGTTTGC TGCGCAGTCC GTTTGGTGTG
CGGAATGTCA AAATCTACCT GAATGATTTT CCGTTAACAG ATGCCGGGGG GAATACCTAT
TTAAATTCGT TAGATGCTTC CGGTATGAGC AGCATGGAAA TATGGAAAGG ACCTTACGGC
AGTTTATATG GGGCAAATAC AGGTGGTGTC GTTCGTGTCC GCACGTATGA ACAACAGGAA
AGCACTCAGG CAGCCGTTTC GCTTACCGGA GGTTCGTATG GGTTGTTTCA TCAGACGCTG
AGTGTTCAGC AGGTATGGAA AAAACAATTT CTTAAAATCA GCCAGGCCTT TCAGCGATCC
GATGGATATA GGGAACAAAG CACGTTACAG CGCCAGTTTT ATCAGGCATC GTATCATGCA
GATTACCATA AAGGGATGCG CTTCAAAGCG CTGGGTTTTT ATTCCGATCT GAATTATCAG
ACACCCGGCG GACTGACACT GGAAGAGTTG AACGACAATC CACGCGCTGC ACGTCCCGCA
GCCGGAGTGA TACCCGGGGC AGTAGAACAG CACGCGCAGA TATACAATAA AATGCTTTAT
ACAGGCATCG GGCATGAAGC AGCTTTAGGT AATCATTTCC GTCACGTGGT ATCTGTTTTT
GCAAGTCACA CAAACTTTCA GAATCCTGCC ATTTCAAACT ATGAAATCCG GAAAGAAATG
ACGTATGGAC TGCGCACGTA TGTGGAAGCT TCCGGGAAAC AAACGTATAA GCTGCTCTGG
AACTGGAACA TTGGTGCAGA GTGGCAAAAA ACACAATCTG CTATATCAAA CTACAGAAAT
AACGCTGGCA CAAAAGATAC ACTGCTTGCG GAAAATGATG TACAGGCACG GCAGTATTTT
TTGTTTACAC AATTTTCTGC CACACTATTC AACCGGCTGA TTGTTGAAGC AGGTTTAAGT
TTAAATAACT ATATCTATAA CTACCGGTCT GTAAGCCGCC GCGAAGATTG GGTACATCAG
CCGTTTGAGA TCCAGTTGAT GCCGCGTGTC GCATGTTCCT ATAAGCTACG TCAGCAGCTG
CTGTGGCGGG CTTCTGTAAG TAAAGGCTAT TCACCGCCGA CCATTGCAGA GATCCGGCCG
AATGATAACA CCATTCATAC AGATCTGCAG GCCGAGTATG GCTGGAATTA TGAAACAGGA
TTGCGCTTTC AGAACAACCG TCTGCGGGCA GATGTTGCTG TGTTTTATTA TGCGTTGAAG
CAAGCCATTG TTAGCCGCAT AAATGCCGGC AACAATCAAT ATTTTGTGAA TGCAGGCGGT
ACCAGCCAGC CTGGTCTGGA AACGCAACTT TCCTATGCTG TACTGCAGCA GCAATCAGGT
TTGGTGCGAT TACTTGAATT GAAAAACAGC ATTACCTGTT ATGTGTTTTC ATTTGATCAA
TACAAAAACG GCAGCATAGA TTATTCCGGA AACAGGCTTA CAGGTGTGCC GCGTACGGTA
GTTGTGAGCA GTATGTTTGT GCGTTTTGCC AAAGGAATGC ATTTCTATCT TCAATATAAT
TATACAGGAA AAATCCCATT GAATGATGCC AATACAATGT ATGCAGCAAA TTATCATTTG
GTGCAATCAA AAATCGGTGT TGATCTTACG GTAAAAAGAA CCGTGCTGGA AATATTTCTG
GGTGCTGATA ACCTGTTAAA TCAGCGGTAT AGTCTGGGTA ATGATCTGAA TGCCTTTTCA
GGCAGGTATT ACAACGCTGC CGCAGCCCGC AATTTTTACG GCGGAACTAA AATTGTTTTT
TAG
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| Protein sequence | MLKNAFTCFV LTIAFYSTLK SQAQIIDTVA VYEDKEIEFR FLNLKQSPAS VDSIQPASHQ
PAFTLVPALN TLPGVRMEER SPGSYRLSIR GSLLRSPFGV RNVKIYLNDF PLTDAGGNTY
LNSLDASGMS SMEIWKGPYG SLYGANTGGV VRVRTYEQQE STQAAVSLTG GSYGLFHQTL
SVQQVWKKQF LKISQAFQRS DGYREQSTLQ RQFYQASYHA DYHKGMRFKA LGFYSDLNYQ
TPGGLTLEEL NDNPRAARPA AGVIPGAVEQ HAQIYNKMLY TGIGHEAALG NHFRHVVSVF
ASHTNFQNPA ISNYEIRKEM TYGLRTYVEA SGKQTYKLLW NWNIGAEWQK TQSAISNYRN
NAGTKDTLLA ENDVQARQYF LFTQFSATLF NRLIVEAGLS LNNYIYNYRS VSRREDWVHQ
PFEIQLMPRV ACSYKLRQQL LWRASVSKGY SPPTIAEIRP NDNTIHTDLQ AEYGWNYETG
LRFQNNRLRA DVAVFYYALK QAIVSRINAG NNQYFVNAGG TSQPGLETQL SYAVLQQQSG
LVRLLELKNS ITCYVFSFDQ YKNGSIDYSG NRLTGVPRTV VVSSMFVRFA KGMHFYLQYN
YTGKIPLNDA NTMYAANYHL VQSKIGVDLT VKRTVLEIFL GADNLLNQRY SLGNDLNAFS
GRYYNAAAAR NFYGGTKIVF
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