| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0601 |
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| Symbol | rpoE |
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| ID | 4185801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | - |
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| Start bp | 704170 |
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| End bp | 704775 |
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| Gene Length | 606 bp |
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| Protein Length | 201 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638070606 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_677228 |
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| Protein GI | 110637021 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAGGAGC AAAATTCCAA AACCCGATAT AAAAGTAAGG AAGAAAAGGA TAGCCTTTTT
GAAAAGGAAT TTATGCACCT ACTGGGCCCG CTTTACAACT TCGGTTATAG ATTAACCTTA
GATGAAGACG ATGCAAATGA TTTGGTACAA GAGACTTATT TAAAAGCATA TCGTTTTTTT
GATTCTTACG AAAAAGGAAC TAATGCAAAA GCATGGTTGT TTAGAATCCT GAAAAACACC
TTTATTAATG AATATCGCCG CAAGACGAAG GAGCCTAATA AAGTCGATTA TCAGGAAGTT
GAATCCTATT ATAACTCAGA TGAAGTAAAT GAACCTATCA CCAGCGATCT GCGGGTAGAT
TCATTAAATA ATATGATTGG CGACGAAGTT GCCAATGCGC TGAATGCGCT GGATGTAGAT
TTCAGAACCA TCATCATTTT ATGCGATCTG GAAGGTTTTA CGTACGAAGA AATGGCTAAA
ATATTAGACA TTCCTATTGG AACGGTACGT TCCCGACTGC ACAGAGCCAG AAATGTATTA
AAAGAAAAAT TACAGGAATA TGCCCAATCA ATGGGTTATA AGGATCAACG AAAGAAACAC
GATTAA
|
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| Protein sequence | MEEQNSKTRY KSKEEKDSLF EKEFMHLLGP LYNFGYRLTL DEDDANDLVQ ETYLKAYRFF
DSYEKGTNAK AWLFRILKNT FINEYRRKTK EPNKVDYQEV ESYYNSDEVN EPITSDLRVD
SLNNMIGDEV ANALNALDVD FRTIIILCDL EGFTYEEMAK ILDIPIGTVR SRLHRARNVL
KEKLQEYAQS MGYKDQRKKH D
|
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