| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0399 |
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| Symbol | |
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| ID | 4184233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 468142 |
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| End bp | 469923 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638070407 |
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| Product | glucoamylase-related protein, trehalase |
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| Protein accession | YP_677029 |
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| Protein GI | 110636822 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.216447 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.225256 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGTGC CACATAAATA CGACATGGGA GTCGTAGGGA ATTGCTCATT TATCGCGTAT
GTAAATAAAA ATACGAATAT TGACTGGATG TGTCTGCCAA GATTTGATTC AGATTTTATG
TTTGGCGCAT TGCTTGATAA AGAAAAGGGC GGAGAGTTTT CGATTAAGCC GGCCGAAGAA
AATACAACAA CATATGAACA ACGTTATTTA GAAAATACAA ACATACTGGT CACCATATGT
CATACCGCTT CCGGCAGCTA CAAAGTAACC GATTTTGCAC CGCGATTTGT GCAGCATAAC
CGGAACTTCA GGCCGTTAAT GCTGGTTCGT AAAATTGAAG TGCTGACAGG AAAGCCGCGC
GTAATTGTAA CATGTATGCC TGGAAACATG CGGGGCAGGC AGCAGCCGGA AACTTCATAC
GGAAGCAATC ACATCCGCTA TCTGCACCTC GATGCAGATG TTCGGTTGAG TACGAATATT
CCGATCACAT ACATTATTGA TCAAAAGGAA TTTTCGCTAA CAGAAACCAA GTATATGTTT
TTTACTTATG GTCCGCCTCT TGAAGCTGCC ATTGATTATA CGGCTGAAGA GTTTCTTCAG
AAGACGCGCC AATACTGGAA CAATTGGGTA AAGACAACTT ATATTGTAAG TTTTTATCAG
GAACAGATTA TCCGTTCTGC GCTGGCACTT AAGCTGCATC AGTATGAAGA TACAGGCGGT
ATTATTGCTG CCGGAACAAC GAGCCTGCCG GAAAGTGACG GAGCAACACG AAATTGGGAT
TACAGATATT GCTGGATGCG GGATACGTAT TATACCTTAC AGGCATTCAA TACCATCGGA
CACTTTGAAG AGTCAGAAAA ATATTTTCAC TACATAGAAA ATATTGTAGC GAATGAATTG
GATCGTATCC AACCCTTGTA CACCCTTGAT TGTTCGAAAA AAATAGAAGA AATAGAATTA
GACCTGGAAG GATATAAAGG AAATAAGCCT GTGCGCGTTG GTAACGATGC ATATACACAT
ATTCAGAATG ATGTATACGG ACAGATACTG GCAAGTATTA CACCCCTGTT TACAGACAGG
CGCTTGCTGC ACGGTAATCA GTTCTCAACG GATATCGTTT ATAAGCTTCT TGCTTTTATT
GATAAAACAA TGAATGAAAA AGATGCAGGC CTCTGGGAGT TCAGGCATTT GAAGCAACTG
CATTGCTATA CCTTTTTATT CCATTGGGTA GGAGCGAAGT CTGCCTTAAA GATCGGACAG
CTGTATGGCG ATCATGAATT GATTAGAAAA TCTACTGCAA CAATTGACAA AGCCGCTGAA
ATGATTGAGC GCTGTTATGA TCCCGTTCGC AAGGTGTATA CACAAGCAGT TGGTTCAACC
TATCTGGATG CAAGCTGTAT TCAGCTGATC AGTATGCATT ACTTAGATCC TTCGTCTGAA
AAAGCGCGCC TGCATTTAAA AGCAATCGAA GAGGATCTGA TGGTTAAAGA TGGCTTGTTA
TTCCGGTATA AACACGAAGA TGATTTTGGA AAACCGGAAG TAACCTTTTT AGTGTGTGCA
TTCTGGTATG TAGATGCACT GGCGTCTGTG GGTCGCATTG ATGACGCGAT AAAGGCATTT
GAATCGTTAC TTACATATAC AAACCATGTT GGTTTGTTGA GTGAAGATGT AGGGCTGGAT
GGCAGCCAAT GGGGCAATTT TCCGCAAACA TACAGTCATG TAGGTCTTAT GAACTCTGCT
TACCGGATTG CAAAAAAATT AGATCGTCCA TCATATATAT AA
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| Protein sequence | MKVPHKYDMG VVGNCSFIAY VNKNTNIDWM CLPRFDSDFM FGALLDKEKG GEFSIKPAEE
NTTTYEQRYL ENTNILVTIC HTASGSYKVT DFAPRFVQHN RNFRPLMLVR KIEVLTGKPR
VIVTCMPGNM RGRQQPETSY GSNHIRYLHL DADVRLSTNI PITYIIDQKE FSLTETKYMF
FTYGPPLEAA IDYTAEEFLQ KTRQYWNNWV KTTYIVSFYQ EQIIRSALAL KLHQYEDTGG
IIAAGTTSLP ESDGATRNWD YRYCWMRDTY YTLQAFNTIG HFEESEKYFH YIENIVANEL
DRIQPLYTLD CSKKIEEIEL DLEGYKGNKP VRVGNDAYTH IQNDVYGQIL ASITPLFTDR
RLLHGNQFST DIVYKLLAFI DKTMNEKDAG LWEFRHLKQL HCYTFLFHWV GAKSALKIGQ
LYGDHELIRK STATIDKAAE MIERCYDPVR KVYTQAVGST YLDASCIQLI SMHYLDPSSE
KARLHLKAIE EDLMVKDGLL FRYKHEDDFG KPEVTFLVCA FWYVDALASV GRIDDAIKAF
ESLLTYTNHV GLLSEDVGLD GSQWGNFPQT YSHVGLMNSA YRIAKKLDRP SYI
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