| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0396 |
|---|
| Symbol | ycaK |
|---|
| ID | 4184230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 466137 |
|---|
| End bp | 466715 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638070404 |
|---|
| Product | quinone family oxidoreductase/NAD(P)H dehydrogenase |
|---|
| Protein accession | YP_677026 |
|---|
| Protein GI | 110636819 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2249] Putative NADPH-quinone reductase (modulator of drug activity B) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.030635 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.183286 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TTCTCATAAT AAAAGGACAC CCGAATAAAA ACAGTTTTAA TACTGCCCTT
GCAGAGGCCT ATAAAACCGG CGCTTCCACG CAGCAGGTAG AAATCAAAGA AATTTCCATT
GCAGATCTGA ACTTTGATCC CAATCTGGCA TTTGGCTATG AAAAAAGAAT GCCGCACGAA
CCAGATTTAC TAGACGCCTG GGAGAAGATC AAATGGGCAG ATCACCTGGT ATGGGTTCAC
CCGGTATGGT GGGGAAGTAT GCCGGCAAAA TTAAAAGGTT TTATAGACCG GTTGTTTTTA
CCCGGACTGG CATTTAAATA CAGAGAAAAT TCTGTTTGGT GGGATAAGCT TCTTACCGGC
AAAACAGCGC ACATCATTAC CACACTCGAT CAGCCGGGTT GGTATTATGC ATTGGTTTAT
GGAAAACCAA GTATCAATCA ATTAAAAAAA TCTACGCTGC ACTTCTGCGG TATTAAGCCT
GTAAACGTTA CGTATATTGG TATCATAAAA GATGCAACCG AGAAACAGCG GAACAAATGG
CTGCAACGCG TAGAGTCGCT TGGCAAAAAA TTAAAGTAA
|
|---|
| Protein sequence | MKNILIIKGH PNKNSFNTAL AEAYKTGAST QQVEIKEISI ADLNFDPNLA FGYEKRMPHE
PDLLDAWEKI KWADHLVWVH PVWWGSMPAK LKGFIDRLFL PGLAFKYREN SVWWDKLLTG
KTAHIITTLD QPGWYYALVY GKPSINQLKK STLHFCGIKP VNVTYIGIIK DATEKQRNKW
LQRVESLGKK LK
|
|---|
| |