Gene CHU_0395 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0395 
Symbol 
ID4184229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp464817 
End bp466109 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content42% 
IMG OID638070403 
Productpermease 
Protein accessionYP_677025 
Protein GI110636818 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.0177527 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.113221 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAATC CGAATCCGGA ATTACCGGTT GTTCAAAGCG GTGCGTGGGT GCAAAAGATC 
TATGGGGCAT TTCCGGCATT TCAAAGCAAA AACTACAAAT TGTATTTTTC CGGTCAATTG
GTTTCTATGA TCGGAACCTG GATGCAGATT GTAGCTCAAA GCTGGCTGGT ACTTCAGCTC
ACTGAGTCTG TGTTTTTAAT TGGCCTGGTG ATGGCACTTT CAACCTTACC TACGTTATTG
TTTACGTTGT TTGGAGGCGT TATCGTAGAT CGTTTTCCCA AAAAGGAAAT ATTGTTTTAT
ACGCAGTTTG CGGCAATGAT TCTTGCGCTA ACGCTGGGGA TTCTTACTGT ATTTGATTGG
ATTGCAATCT GGGAAATATG TGTGATTGCG TTTCTGCTGG GAATGGTTAA TGCAGTGGAT
GCTCCCGCGC GGCAGGCATT TGTAACCGAA CTGGTGGATC GGGATCAATT GCCTTCAGCC
ATTGCATTGA ATTCGGGTGT GTTTAATACA GCCAGAGTTA TCGGGCCAAG TATTGCAGGC
GTACTGATTG CGGTTATCGG TACGGGAGGA GCTTTTATGT TAAATGCCCT GAGCTATGTG
GCAGTAATAC TGGCTTTGCG AAAAATTACC ATACATGAAG TATTCGTAAA GAATACCACG
AAACCATTAG ATGCAATTAA AGAAGGTATT ACCTATTCGT TTACGCACCC TATCATACGT
ACCTTGTTTA TCATCATCGC AATTGTCTCA ATCTTTGGGT GGTCGTACAC TACAGTGCTG
CCCGTTATTG CAAAAAACGA TTTTCATGTG GGGGCCGCCG GACTTGGCTA TTTGTATGCC
GCTTCTGGTT TAGGTTCCTT ATTGGCAACG GTATTGATCG CTTTGTATTC TAAAAAAATA
TCACCGCTGT ATTTTATTAT CGGCGGAACC CTTGTGTTTT CAATCAGCAT CTTTTTATTC
AGTTTTTCAA CAGATATTAA TACAGCATCC ATCTTATTAT TCTTCAGCGG ATTTGGATTG
CTTTCTTTTG CATCGCAATC AAACACTACG ATTCAGACCT TGGTTAAGAG CGAATTCAGA
GGGCGGGTGA TGAGTATTTA TGTGTTGATG TTTATTGGAT TGACACCACT AGGGAATTTT
CAAATCGGGT TGATTTCTGA ATACTGGGGT GTACCGCTTG CGTTGCGAGC CGGCGCAGCC
ATTGTACTTG TTGCCGGACT GACTGTATTT TTATTTAAAA ACAGGATTAT TGAAAAATAT
CATGGCTATA AAAAGAATGT ATCGGTTTTA TAA
 
Protein sequence
MLNPNPELPV VQSGAWVQKI YGAFPAFQSK NYKLYFSGQL VSMIGTWMQI VAQSWLVLQL 
TESVFLIGLV MALSTLPTLL FTLFGGVIVD RFPKKEILFY TQFAAMILAL TLGILTVFDW
IAIWEICVIA FLLGMVNAVD APARQAFVTE LVDRDQLPSA IALNSGVFNT ARVIGPSIAG
VLIAVIGTGG AFMLNALSYV AVILALRKIT IHEVFVKNTT KPLDAIKEGI TYSFTHPIIR
TLFIIIAIVS IFGWSYTTVL PVIAKNDFHV GAAGLGYLYA ASGLGSLLAT VLIALYSKKI
SPLYFIIGGT LVFSISIFLF SFSTDINTAS ILLFFSGFGL LSFASQSNTT IQTLVKSEFR
GRVMSIYVLM FIGLTPLGNF QIGLISEYWG VPLALRAGAA IVLVAGLTVF LFKNRIIEKY
HGYKKNVSVL