Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0395 |
Symbol | |
ID | 4184229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 464817 |
End bp | 466109 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638070403 |
Product | permease |
Protein accession | YP_677025 |
Protein GI | 110636818 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0177527 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.113221 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGAATC CGAATCCGGA ATTACCGGTT GTTCAAAGCG GTGCGTGGGT GCAAAAGATC TATGGGGCAT TTCCGGCATT TCAAAGCAAA AACTACAAAT TGTATTTTTC CGGTCAATTG GTTTCTATGA TCGGAACCTG GATGCAGATT GTAGCTCAAA GCTGGCTGGT ACTTCAGCTC ACTGAGTCTG TGTTTTTAAT TGGCCTGGTG ATGGCACTTT CAACCTTACC TACGTTATTG TTTACGTTGT TTGGAGGCGT TATCGTAGAT CGTTTTCCCA AAAAGGAAAT ATTGTTTTAT ACGCAGTTTG CGGCAATGAT TCTTGCGCTA ACGCTGGGGA TTCTTACTGT ATTTGATTGG ATTGCAATCT GGGAAATATG TGTGATTGCG TTTCTGCTGG GAATGGTTAA TGCAGTGGAT GCTCCCGCGC GGCAGGCATT TGTAACCGAA CTGGTGGATC GGGATCAATT GCCTTCAGCC ATTGCATTGA ATTCGGGTGT GTTTAATACA GCCAGAGTTA TCGGGCCAAG TATTGCAGGC GTACTGATTG CGGTTATCGG TACGGGAGGA GCTTTTATGT TAAATGCCCT GAGCTATGTG GCAGTAATAC TGGCTTTGCG AAAAATTACC ATACATGAAG TATTCGTAAA GAATACCACG AAACCATTAG ATGCAATTAA AGAAGGTATT ACCTATTCGT TTACGCACCC TATCATACGT ACCTTGTTTA TCATCATCGC AATTGTCTCA ATCTTTGGGT GGTCGTACAC TACAGTGCTG CCCGTTATTG CAAAAAACGA TTTTCATGTG GGGGCCGCCG GACTTGGCTA TTTGTATGCC GCTTCTGGTT TAGGTTCCTT ATTGGCAACG GTATTGATCG CTTTGTATTC TAAAAAAATA TCACCGCTGT ATTTTATTAT CGGCGGAACC CTTGTGTTTT CAATCAGCAT CTTTTTATTC AGTTTTTCAA CAGATATTAA TACAGCATCC ATCTTATTAT TCTTCAGCGG ATTTGGATTG CTTTCTTTTG CATCGCAATC AAACACTACG ATTCAGACCT TGGTTAAGAG CGAATTCAGA GGGCGGGTGA TGAGTATTTA TGTGTTGATG TTTATTGGAT TGACACCACT AGGGAATTTT CAAATCGGGT TGATTTCTGA ATACTGGGGT GTACCGCTTG CGTTGCGAGC CGGCGCAGCC ATTGTACTTG TTGCCGGACT GACTGTATTT TTATTTAAAA ACAGGATTAT TGAAAAATAT CATGGCTATA AAAAGAATGT ATCGGTTTTA TAA
|
Protein sequence | MLNPNPELPV VQSGAWVQKI YGAFPAFQSK NYKLYFSGQL VSMIGTWMQI VAQSWLVLQL TESVFLIGLV MALSTLPTLL FTLFGGVIVD RFPKKEILFY TQFAAMILAL TLGILTVFDW IAIWEICVIA FLLGMVNAVD APARQAFVTE LVDRDQLPSA IALNSGVFNT ARVIGPSIAG VLIAVIGTGG AFMLNALSYV AVILALRKIT IHEVFVKNTT KPLDAIKEGI TYSFTHPIIR TLFIIIAIVS IFGWSYTTVL PVIAKNDFHV GAAGLGYLYA ASGLGSLLAT VLIALYSKKI SPLYFIIGGT LVFSISIFLF SFSTDINTAS ILLFFSGFGL LSFASQSNTT IQTLVKSEFR GRVMSIYVLM FIGLTPLGNF QIGLISEYWG VPLALRAGAA IVLVAGLTVF LFKNRIIEKY HGYKKNVSVL
|
| |