Gene CHU_0298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0298 
Symbol 
ID4186864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp357540 
End bp358508 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content38% 
IMG OID638070307 
ProductKpsF/GutQ family sugar isomerase 
Protein accessionYP_676929 
Protein GI110636722 
COG category[T] Signal transduction mechanisms
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0794] Predicted sugar phosphate isomerase involved in capsule formation
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID[TIGR00393] KpsF/GutQ family protein 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAGTTAA CAAAAAATAT CGTATCCATT GTAACAGATG TAATATTAAA TGAATCTGAA 
GCAATAAAAA ATCTGGTCAA TCATATTAAT GATGATTTTC AGCATATTAT TGACGCAATC
CTGTCATGTA AGGGAAGAGT TGTAATTACT GGCATCGGTA AAAGTGCCAT CATCGGCAAT
AAGATAGTAG CAACCCTGAA TTCAACCGGT ACACCTGCTT TATTCATGCA TGCTGCAGAT
GCCATACACG GTGATTTAGG AATGATCCAG GGTGGTGATG TGGTAATTTG TATTTCCAAA
AGCGGAAATA CACCAGAAAT CAAAGTTTTA GTACCATTGA TAAAAAACAG AGGCACCATT
TTGATTGGAA TGGTAGGGAA TGTAGATTCA TACCTGGCAG TACAATCTGA TTATGTGTTA
AACGTTACTG TAGAGCGTGA GGCTTGCCCC AATAACCTTG CTCCTACAAC CAGTACTACG
GCTACGCTTG TAATGGGTGA TGCGTTGGCG GTTGCTTTAT TGGAATGCAG AAATTTCAGC
AGTGAAGATT TTGCTCAGCT GCACCCGGGC GGCGCATTAG GAAAACAATT GTATTTACGC
GTAAATGACG TCTACACTGC AAATGAAAAA CCAATGGTAG CACCGGATGC AACGGTTAAG
GATGTTATTC TTGAAATTTC ATCCAAACGT TTAGGTGCTG CAGCTGTTGT AGATTCGGCA
GGAATTTTGC AAGGTATTAT TACAGATGGA GATTTGAGAA GAATGTTAAA TGCACATGAT
TCATTCAAAC AGTTATGTGC AGCTGATATT ATGACCAAAG CACCCAAGAC AATTGACGCA
GATGAATTTG CAGCTTCTGC CATGCTGCTT ATGCAGTCTA AAAATATTAC ACAGTTGATT
GTTATGAAAA ATGAAAATTT TGCTGGATTT ATTCATATAC ATGATTTATT AAAAGAAGGA
ATTGTTTAA
 
Protein sequence
MKLTKNIVSI VTDVILNESE AIKNLVNHIN DDFQHIIDAI LSCKGRVVIT GIGKSAIIGN 
KIVATLNSTG TPALFMHAAD AIHGDLGMIQ GGDVVICISK SGNTPEIKVL VPLIKNRGTI
LIGMVGNVDS YLAVQSDYVL NVTVEREACP NNLAPTTSTT ATLVMGDALA VALLECRNFS
SEDFAQLHPG GALGKQLYLR VNDVYTANEK PMVAPDATVK DVILEISSKR LGAAAVVDSA
GILQGIITDG DLRRMLNAHD SFKQLCAADI MTKAPKTIDA DEFAASAMLL MQSKNITQLI
VMKNENFAGF IHIHDLLKEG IV