| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0162 |
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| Symbol | |
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| ID | 4183555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 201490 |
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| End bp | 202659 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 638070171 |
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| Product | cation efflux system protein |
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| Protein accession | YP_676794 |
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| Protein GI | 110636587 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.002148 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.387859 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGAAAACGA TCATGAAAGC AATATATATA ATAAGTCTTT TGACAGCTGC CGCATTAAGT
GCGTGCAGTT TGAAACCACA GGAAGAAGAA ATTCAAAAAG ACAGCATTGC CGATTTAGCT
GTGACACTAT CAGCTGCACA GCTTAAGCAT ATACATTTAT CAACTACCAA AATAGAAAAG
AAAAAATTAG GAGCATCAAT AGAAGTAAAT GGAATGCTGG ATGTGCCTCC TCAAAATCTT
ATTACGGTGT CTGCATTATT GGGTGGTTTT ATTAAAACAA CAAGTATGCT TCAAGGTATT
CACGTAAAGA AAGGTGAGGT AATTGCACAA ATTCAGAATC CGGAGTTTAT AACCATTCAA
CAGAATTATT TAGAAAATAA AAGCAGACTT GGTTATTTAG AGCAGGAATA TAAAAGACAG
GAAGAGCTTT CGAAAGAAAA TGTTGCAGCA GCTAAAACAT TTCAGCAAGC TACTGCAGAC
TATCATTCGG CAGTGGCAAC GAACGGTGCA TTAAAAGAAA AATTAAAAAT GATTGGCATT
AATCCGGATG GGCTTAATCA AAACAATATC AAAAGCATTG TAAATATTTA TTCGCCGATA
AATGGTTATG TAACCGTTGT GAATATTAAC ATCGGTTCGT ACTTAAACCC GCAGGATATC
ATTTGTGAAA TTGTAGATAC CGACCACTTG CATGCTGAAC TGACGGTTTT TGAAAAGGAT
ATTACCAAAG TGAAAGTTGG ACAGAAAGTA GTTTTTAAAA TTGTGAATGG AAATGATGCG
GATCGATTCG CACATGTGTA TTTAATTAAT CACAAAATAT CTGCAGACAG AACCGTACGT
GTACATGCTC ACCTGGATAA AGATGATCCC ACATTAATTC CTAATATGTA CCTGAAGGCG
TTTATTCAGG TAGATGAATA CGAAACACTG GCGGTACCAA GTAAAGCATT GGTTGAATTT
GACGGGGCGA GCTATCTTTT TGTAGAAAGC GTTAGCAATG GTGAAGCTCA TACATACAAG
GCGGTAGAAG TAAAGAAAGG AATTTCAGAA GGAAACTTTA CTGCCATTGA ATTCCTTTCA
GAAGGTGATA CTTTTAAAGA TAAAAATGTT GTTGTCGATG GATCGTATGA TCTGCTCGCA
AAAATGCGAA ATGTAGAAGA AGAGGAGTAA
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| Protein sequence | MKTIMKAIYI ISLLTAAALS ACSLKPQEEE IQKDSIADLA VTLSAAQLKH IHLSTTKIEK
KKLGASIEVN GMLDVPPQNL ITVSALLGGF IKTTSMLQGI HVKKGEVIAQ IQNPEFITIQ
QNYLENKSRL GYLEQEYKRQ EELSKENVAA AKTFQQATAD YHSAVATNGA LKEKLKMIGI
NPDGLNQNNI KSIVNIYSPI NGYVTVVNIN IGSYLNPQDI ICEIVDTDHL HAELTVFEKD
ITKVKVGQKV VFKIVNGNDA DRFAHVYLIN HKISADRTVR VHAHLDKDDP TLIPNMYLKA
FIQVDEYETL AVPSKALVEF DGASYLFVES VSNGEAHTYK AVEVKKGISE GNFTAIEFLS
EGDTFKDKNV VVDGSYDLLA KMRNVEEEE
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