| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0113 |
|---|
| Symbol | secDF |
|---|
| ID | 4185943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | - |
|---|
| Start bp | 137665 |
|---|
| End bp | 140640 |
|---|
| Gene Length | 2976 bp |
|---|
| Protein Length | 991 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638070115 |
|---|
| Product | bifunctional preprotein translocase subunit SecD/SecF |
|---|
| Protein accession | YP_676746 |
|---|
| Protein GI | 110636539 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.758548 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATA AGAATTTAAT TATCGCACTC ACAGTGATAG TAACCGCACT GTGTTTCTTT
TACATCTCAT TCACCTTTGT AGCAAGAGGT GTTGAGAAAG ATGCTGTAGA TGCAGCAACA
ACAGCGGATG GAAAAGTAGA CATCCAGAAA AAACAGGCCT ATATGGACTC TATATATAAT
GAGCCTGTAT ATAACTTCTT AGGTGCAAAA TATACGTACA AAGAAGTGAA ATCTCTTGAG
CTGGCATTAG GTCTTGATTT ACAAGGCGGG ATGCACGTTG TGCTTGAAGT TTCTCCTGTA
GAAATTTTAC AAGCTATGGC TGGATCAAAT GCTGAAAGCG CTGATTTCAA AAAGGCTATT
GAATTAGCGA AAGAAAAGCA ACGTAACAGC CAGGGCACAT TTCAACAAGC ATTTTTTGAC
TCATACCGCA GCATTGCCGG TGCAAATAAT CTGAGCAAAA TTTTTGCAAA TGCTACAAAT
AAAGGGAAAA TTGATATTCG CTCTACTGAT AAGGATGTAG AGAAAGTGAT CAATGAAGAA
ATTGATTTGT CTGTTGAGCG TTCGTTTAAC ATTTTACGTA ATCGTATTGA TAAGTTTGGC
GCCATTCAGC CAAACATACA GCGTATCCGC GGTACAGGCC GTATCCTTGT TGAATTGCCA
GGCGTTGAAA ACCCTCAGCG TGTTCGTAAC CTGTTGCAAG GAACTGCAAA ATTAGAATTC
ATGGAAGTAT ATCAGATCTA TGAAATTGCA GAGAAAACAA ACCGTATCAA CGACTATTTA
ATAAATCTTG CTGAAGAGAA AAAAACATCT TCTGCATCTG ATACTTCCGT TGCTGTAACA
ACTACAGATA ATTCTTCTTT ATTGGTAACA AACTCTGCTG ACAAAGATGC AGCAACTGTT
AAAGCCGATA CATCTGCTGC GGCAAAAGAC ACAAGCAAAG TTTCTGACTT CTACCGTTTA
ATTCAGGCTC AAGGTGGTCT TATCTATAAA ACAACAGATA CTTCGATCAT CAATAAAATT
TTAGCGCTTG ACAGAGTAAA AAGCATTATC GGAAATGACT TACGTTTTGT CTGGGACAGA
AAAGCAAACG TTGTTGACGG AGATGTTGGA TATATTGAAT TAGTACCTGT AAAGGTTGGC
CGTGACGGCA AAGCTGCATT AGCAGGCGAT GTTATTACAA ACGTGGGTTA TGGTTTATCT
TCTGATGGTA AAGGATACGA AGTATCTATG CAAATGAGCC CTGCAGGAGC TAAGTCATGG
AGAAAAATTA CAAAAGCTGC TTCTCAGGAA CAAAACAAAA GACGTATAGC TATTGTACTT
GATAACTCTG TATACTCTGC ACCAACCGTG CAAGTTGAAA TTCCAAATGG CAGCTCGTCA
ATTTCCGGAA ACTTTACACT GGATGAATCT AAAGATTTAG CAAATATCTT AAAAGCCGGT
AAACTTCCAG CTCCGGTACG TATCGTTGAA GAAGTTATCG TAGGTCCAAC GCTTGGTCAA
GAGGCTATTA TGGATGGTTT AGTATCTATG TTCGCGGGTA TTGCAATCGT TATCTTATTG
TTAATTATGT ACTACAGCAA AGGTGGTATG GTTGCTAACA TTGCATTGGT GTTTAACATC
ATCTTTACAT TAGGTTTCTT AGCTTCTCTT AACTCCGTAC TTACACTTCC TGGTATTGCA
GGTATCGTAT TAACCATTGG TATGTCGGTA GATGCGAACG TCTTGATCAT GGAACGTATC
AAAGAAGAAC TTGCAAATGG CAAGTCACTG CTTACCGCTA TTGAACTTGG TTATGACAAA
GCATTCAGTT CTATCTTTGA CTCTAACTTA ACAACAATTT TAACAGGTGT TATTTTATTC
TTTTTAGGTG AAGGCCCGGT TAAAGGTTTC GCAACAACAC TTGTACTTGG TGTACTTTGT
TCATTCTTTA CTGCAGTATA TATTACTAAG CTGATCCTTT TATGGATGGC AAAAAACAAA
TCAGACAATG CTATTTCTTT CGATACATTC ATTTCAAAAA ATGCATTTAA GAATTTGAAT
TTTGACTTCA TTTCTAAACG TAAAATAGCA TATGTATTCT CTTCTGCTAT CTTGATTATA
GGTTTAGTAC TAACAATTAT ACAGGGCGGC CTTAACTTAG GCGTAGACTT CAAAGGTGGT
CGTTCATATA TTGTTGAATT CAAAAACCCG GTTGTTGCTT CTGATTTAAG AGATGGTTTG
AATGATTATT TTGAAGGTAA TGGTACAGAA GTTAAAACGT ATGGTTCAGA TTCAAAAGTT
AAAATAACAA CCAGTTATTT AGTAGAAGAT GAATCTGCAG ACGCTGATAA AAAAGTAGAA
GCTGCTTTAG TAAAAGGTGC TGAGAACTAT GCTAAAAACA GTGAATTTAA AATATTAAGC
TCTTCTAAAG TTGGTGCTAC TGTTGCCGAT GATATTAAAA ATGCTTCGTG GAAAGCTATG
TTAGCTTCTC TTATCGGAAT TTTCTTATAC ATCTTCCTGC GATTCAAAAA ATGGCAGTTG
TCTTTAGGTG GTGTTGTTGC ATTGTTCCAC GATACACTAG TTGTTCTTGC TATTTTCGCA
ATCTTACGTG TATTCAATAT CGACTTTGAA ATTGATCAGG TAATTGTTGC AGCCTTACTG
ACAATTATTG GTTTCTCTAT CAATGATACC GTTGTAATCT TTGACCGTGT TCGTGAATTC
GACAAGGAAT CTTCAAAATT AGATATGGCA AGCATGCTGA ATGCATCTAT CAACAGTACA
CTTAGCCGTA CCATTATGAC AACGGTTATT GTATTGGTAT CGGTGTTGAT CTTGTTTATC
TTTGGTGGTG AAACATTAAG AGGTTTCTCT TTCGCCTTAT TAATAGGTGT AGTGTTTGGT
TCTTACTCCA CAATCTTTAT TGCCGTTCCG ATGTTATTAG ATCTTAGATC TAAAGCTGAA
AAAGAAGCTG ATGATAAAAT TTTAGCAGGT AAATAA
|
|---|
| Protein sequence | MRNKNLIIAL TVIVTALCFF YISFTFVARG VEKDAVDAAT TADGKVDIQK KQAYMDSIYN
EPVYNFLGAK YTYKEVKSLE LALGLDLQGG MHVVLEVSPV EILQAMAGSN AESADFKKAI
ELAKEKQRNS QGTFQQAFFD SYRSIAGANN LSKIFANATN KGKIDIRSTD KDVEKVINEE
IDLSVERSFN ILRNRIDKFG AIQPNIQRIR GTGRILVELP GVENPQRVRN LLQGTAKLEF
MEVYQIYEIA EKTNRINDYL INLAEEKKTS SASDTSVAVT TTDNSSLLVT NSADKDAATV
KADTSAAAKD TSKVSDFYRL IQAQGGLIYK TTDTSIINKI LALDRVKSII GNDLRFVWDR
KANVVDGDVG YIELVPVKVG RDGKAALAGD VITNVGYGLS SDGKGYEVSM QMSPAGAKSW
RKITKAASQE QNKRRIAIVL DNSVYSAPTV QVEIPNGSSS ISGNFTLDES KDLANILKAG
KLPAPVRIVE EVIVGPTLGQ EAIMDGLVSM FAGIAIVILL LIMYYSKGGM VANIALVFNI
IFTLGFLASL NSVLTLPGIA GIVLTIGMSV DANVLIMERI KEELANGKSL LTAIELGYDK
AFSSIFDSNL TTILTGVILF FLGEGPVKGF ATTLVLGVLC SFFTAVYITK LILLWMAKNK
SDNAISFDTF ISKNAFKNLN FDFISKRKIA YVFSSAILII GLVLTIIQGG LNLGVDFKGG
RSYIVEFKNP VVASDLRDGL NDYFEGNGTE VKTYGSDSKV KITTSYLVED ESADADKKVE
AALVKGAENY AKNSEFKILS SSKVGATVAD DIKNASWKAM LASLIGIFLY IFLRFKKWQL
SLGGVVALFH DTLVVLAIFA ILRVFNIDFE IDQVIVAALL TIIGFSINDT VVIFDRVREF
DKESSKLDMA SMLNASINST LSRTIMTTVI VLVSVLILFI FGGETLRGFS FALLIGVVFG
SYSTIFIAVP MLLDLRSKAE KEADDKILAG K
|
|---|
| |