| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0089 |
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| Symbol | |
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| ID | 4185998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 104087 |
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| End bp | 106960 |
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| Gene Length | 2874 bp |
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| Protein Length | 957 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 638070089 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_676723 |
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| Protein GI | 110636516 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.012532 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCATTGTA AAAATCAAAC TACAATAAAG CTCGTGATGA ATACTCTACG TTTTCCAAAA
TGGTTGTCCC TATCAGCTGT TTTTCTATTA CTTTCATTTA CCGCCCCTTT TACAAGTTTA
GCTCAGACAG GTTCTCTTAA AGGAACATTA ATCGATTCAA CAGCAAATGA ATTGATTTTC
GGAGCAATCA TTTCATCCCC TGAGTTTCCA AACATCGGTG CTCAGTCGGA TTTTGATGGG
AACTTCTTAA TTCAAAACAT TAAACCCGGA ACGTATAACT TCAAAATATC TTATATCGGA
TATAAAGAAG TGTTATTAAA TGGTATCGTT GTTAATGCAG GCCAGACAAC AGATCTGGGA
ACGATAAATA TAAAGATAGA TGAAGAAGTA CCTGTTATTG AAATTGTGGG AGAAGTAGCT
ACCAACACAG AACAGGCTGT TGTGCAGGAA GTGAGAGCAC AGGATCAGGT TGTTTCAGGG
ATTTCTGCAG AGCAGATATC GAAATCTCAG GATAGAGATG CCGCAGCTGT TATTTCCAGA
ATTCCTGGAG TTACATTAAT AGATGGTCGT TTTATCATGA TCAGAGGTTT AAGTGAACGC
TATAATAACG TTTTATTAAA TGGTGCAATT GCTCCATCGT CCGAATCTGA AACAAGGGCA
TTTTCATTCG ACATTTTACC AAGTAATGTT ATAGATAGAA TACTTGTATT TAAATCCGGT
GCAGCAGAAA TGCCGGGCGA TTTTGCGGGT GGTATTATAA AAGTATATAC AAAAGCGAAT
GTAGATAAAA ACATTACTTC ATTAGGAATC AGCTTGGGCT ACAGAACGGC TACAACGTTT
AAAAGCTTTA CAAGACAAAG CGGCTATAAT GCAGACTGGA CAACTTTCGG AAATAATGCG
AGAGAGCTGC CGGCAGATTT TCCAAAAGAT TTAAAAAATC TTGGTTTTGA TTATAACAAA
TCTGTTGAAT ATTCTAAACA ACTGGATTAC AACTGGAACA CGAAAGAAAC TACTGCAATG
CCGGACTTAA GAATGAATCT GTTGGTTGGC AGAAATTTTT ATGCAGGAAG TGTTAAGATA
AGCTCAATAA ATAACCTGTC GTATTCAAAT GTTTATCAAA GCTACAAAAA TGATCGTTTC
AGATATTGGA ACTATGATTC AGAAGGCAAA AGTGAAACAA AATTAGCATT CAAAGATCAA
TACAGCGTTA ACAGCTATCG CTTAGGTTTA ATGAGCAACT GGTCAGCAAA CTTTACAAAA
AGTGTAAACA AAAAAATACT TACGTTTAGA AATTTTTATA CCAGATCAGC ATTTAACGAA
ACGCAATTCA GAAGCGGTTA TGATAATGAG AAAACGCAGG AGTTATTATT TCAGTCGCTT
CGTTATGGAA CAAACGCAAT TTTCAGCTCA CAGCTTGAAG GTGAACATGG CATGCGTTCA
AACAAAGATA ATTTAACATG GGTTGTTGGT TTCTCTCAGA TCACACGAAG TGAGCCCGAT
TGGAAACGTG CATCCCAGAC ACGTCAGTTA GGCTCTTCAG ATCCTTTCAG AACGGTCGTT
CAGCCTGGCC CTACAGCGCA GGATGGTGCC TCATTCTTTA CAAAACTTAC AGAAGGTGTT
GTTATGAATA GTGTAGACTA TGCAAGAAAC ATGTTAAATC ATACCGACTC TTCACGTGTG
AGATTAACAT TAAAAGTTGG GTATTATGCA GAATATAAAA AGCGTACGTA TTATGCGAGA
TGGATGTCTC TGACTGATGC AGGTATTGAC CCGTCGTTAA AATTCCTTAG CCCGGATGAA
TTATTTCAAT CACAGTATTT AGGTTACCCG AATGGTTTGT TATTACAGGA AGGTACCAGA
ACGCAGGATA GATATGATGC ATCAAATACA TTGATTGCCG GATATGCAGG AGCCAACTTC
GTTATCTCAA AAGTTACTAT TGATGGTGGT CTACGGATGG AGAATAACAG ACAACAGATT
GAATCCGCTG TTGATGGAAC ACCTGTAATC ATTGATAATA AAATTTTAAC TCCATTACCA
TTCCTTAACC TGTCCTACAG ATTCCATGAA AAGTGGGTAT TGAGAGGTAG TGCGATGAAG
ACAATTAACA GACCGGAATT CAGAGAGCTT TCACCATTCC CGTTCTATGA TTTTAACATT
CCTGCAGATA AAACAGGCAA CCCAAACCTG AAAGTATGTG ACATCATAAA CCTGGACACA
AGATTGGAAT TTTATCCGAC CGAAGCTGAA ATGGTTGCAG TTGGTGTGTT TTACAAACAC
TTCAAAAATC CAATTGAAGC ATATCTGTTA CAAGGAGCTT CTAACTTAGT TTATATCTAT
GATAATGCGC CTGAAGCACA ATCTTATGGT GTTGAATTTG AATTAAGAAA ATCTCTTGAA
TCGTTTACTA ATGTTGAATT CATGCAGCGC TTTTCTTTAT TATTCAACGG CTCTTTAATT
TATTCTCAAA TAAATTTTGG AAATGATTTA ACATCGTACA GCAATTTGAT TCAGAAAAGA
GCAATGCAAG GACAAAGCCC ATATGTAGTA AATGCTGGTA TTTACTACAG CTATAGAAAA
ACAAAACTAA GCGGCTTGTA TAATGTTTAC GGTCCAAGAA TATTCTCTGT AGGTGATAGC
CAGATCAGAA CGATCTATGA AATGCCACGT GCGTCCTTAG ATGTAACATA TTCATATGAA
TTGAATAAGA AGACAGAATT AAGAATTGGT ATTTCTAATC TTCTGAACTC CTCAATCAGA
CTGCAGGAAG ATGGAAATAA CAATAGAAAA TTGAATGAGA AAGATATTGA TAAAAATATT
TCTCAATACA GAATCGGACA GAATATCAAT GTTGGTTTTG TATATAATTT CTAA
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| Protein sequence | MHCKNQTTIK LVMNTLRFPK WLSLSAVFLL LSFTAPFTSL AQTGSLKGTL IDSTANELIF
GAIISSPEFP NIGAQSDFDG NFLIQNIKPG TYNFKISYIG YKEVLLNGIV VNAGQTTDLG
TINIKIDEEV PVIEIVGEVA TNTEQAVVQE VRAQDQVVSG ISAEQISKSQ DRDAAAVISR
IPGVTLIDGR FIMIRGLSER YNNVLLNGAI APSSESETRA FSFDILPSNV IDRILVFKSG
AAEMPGDFAG GIIKVYTKAN VDKNITSLGI SLGYRTATTF KSFTRQSGYN ADWTTFGNNA
RELPADFPKD LKNLGFDYNK SVEYSKQLDY NWNTKETTAM PDLRMNLLVG RNFYAGSVKI
SSINNLSYSN VYQSYKNDRF RYWNYDSEGK SETKLAFKDQ YSVNSYRLGL MSNWSANFTK
SVNKKILTFR NFYTRSAFNE TQFRSGYDNE KTQELLFQSL RYGTNAIFSS QLEGEHGMRS
NKDNLTWVVG FSQITRSEPD WKRASQTRQL GSSDPFRTVV QPGPTAQDGA SFFTKLTEGV
VMNSVDYARN MLNHTDSSRV RLTLKVGYYA EYKKRTYYAR WMSLTDAGID PSLKFLSPDE
LFQSQYLGYP NGLLLQEGTR TQDRYDASNT LIAGYAGANF VISKVTIDGG LRMENNRQQI
ESAVDGTPVI IDNKILTPLP FLNLSYRFHE KWVLRGSAMK TINRPEFREL SPFPFYDFNI
PADKTGNPNL KVCDIINLDT RLEFYPTEAE MVAVGVFYKH FKNPIEAYLL QGASNLVYIY
DNAPEAQSYG VEFELRKSLE SFTNVEFMQR FSLLFNGSLI YSQINFGNDL TSYSNLIQKR
AMQGQSPYVV NAGIYYSYRK TKLSGLYNVY GPRIFSVGDS QIRTIYEMPR ASLDVTYSYE
LNKKTELRIG ISNLLNSSIR LQEDGNNNRK LNEKDIDKNI SQYRIGQNIN VGFVYNF
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