Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0087 |
Symbol | ispH |
ID | 4185996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 102449 |
End bp | 103330 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638070087 |
Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
Protein accession | YP_676721 |
Protein GI | 110636514 |
COG category | [I] Lipid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0761] Penicillin tolerance protein |
TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 42 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0564408 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATGTAA TTATAGATAA AAATTCAGGC TACTGTTTCG GCGTTGAGTT TGCTATTCAG ATGGCGGAAG ATGAAATGGC TACAGGCGAG CCGTTGTTTT GTCTTGGCGA CATCGTTCAT AATAGCATGG AGGTAGAGCG GTTAGCTAAA AAAGGATTGA AAATTATAGA TCGGGAAGAA TTAAAAAAAC TTTCAGATTG TAAAGTTTTA ATCCGTGCAC ACGGAGAGCC GCCGGAAACC TACCAGCTTG CATTAGAAAA TAATATTGAA CTGGTAGATG CATCTTGTCC GGTTGTATTA AAACTGCAGA ACAGAGTTAA AGCATCGTTT GACGCTATTG ATTCAAAAGA CGGGCAGATT GTCATATACG GACAGGAAGG TCACGCTGAA GTGATTGGTA TTGCAGGCCA GACAGGAGAT AAAGCAATTG TTATTACAAC GGAAAAAGAT CTGGATAAGA TTGATTTTGA AAAGCCTGTA ACCTTGTATT CTCAAACAAC AAAAAGTACA CAGGGTTTTT ATAAAATGAA AGACCTGATT GAAGCACGTG TTGCAGAAGC AGGAAAAAAC GTTGACGAAA ACTTTGAATA CAATGACAGT ATTTGCAGAC AGGTATCAAA CAGAGAGCCT CAGTTGAGAA AATTCTCAAA GGAATTTGAT GTTGTTATTT TTGTGAGCGG CAAAAAAAGC TCAAACGGCA AAGCATTATA CGGCGTTTGT AAACAGGAAA ACGAACGGAG TTATTTTGTA GAAAATGAAA CAGAAATAGA ACCTTCCTGG ATAAGAGCTA CAGACAATGT AGGCATCTGC GGTGCAACGT CTACCCCTAT GTGGCTGATG GAAAAAGTGC AGAACTATAT ACAGGCACAC TCCTGGAATT AA
|
Protein sequence | MDVIIDKNSG YCFGVEFAIQ MAEDEMATGE PLFCLGDIVH NSMEVERLAK KGLKIIDREE LKKLSDCKVL IRAHGEPPET YQLALENNIE LVDASCPVVL KLQNRVKASF DAIDSKDGQI VIYGQEGHAE VIGIAGQTGD KAIVITTEKD LDKIDFEKPV TLYSQTTKST QGFYKMKDLI EARVAEAGKN VDENFEYNDS ICRQVSNREP QLRKFSKEFD VVIFVSGKKS SNGKALYGVC KQENERSYFV ENETEIEPSW IRATDNVGIC GATSTPMWLM EKVQNYIQAH SWN
|
| |