| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0059 |
|---|
| Symbol | gmd |
|---|
| ID | 4186980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cytophaga hutchinsonii ATCC 33406 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008255 |
|---|
| Strand | + |
|---|
| Start bp | 72222 |
|---|
| End bp | 73334 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638070059 |
|---|
| Product | GDP-D-mannose dehydratase |
|---|
| Protein accession | YP_676693 |
|---|
| Protein GI | 110636486 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1089] GDP-D-mannose dehydratase |
|---|
| TIGRFAM ID | [TIGR01472] GDP-mannose 4,6-dehydratase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0291032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG CATTAATTAC AGGAGTAACG GGTCAGGATG GCGCTTATTT GAGCGAGTTT
TTATTGAAAA AAGGATACGA AGTTCACGGC GTTAAAAGAA GATCTTCATT GTTTAACACA
GATCGTATAG ATCATTTATA TGTAGATCAG CATGAAAAAA ATGTAAAATT CAAGTTACAT
TATGGTGATT TAACAGATTC TACCAATTTA ATCCGCATTA TCCAGGAAGT TCAGCCGGAT
GAAATATATA ATTTAGGAGC CATGTCTCAC GTAAAAGTGA GCTTTGATAC GCCGGAATAT
ACTGCCAATG CAGATGGTAT CGGAACACTG CGTATCCTTG AAGCAATCCG TATTTTAGGT
TTGGAAAAAA AGACTAAAAT CTATCAGGCT TCTACATCTG AACTTTACGG TTTGGTACAG
GAAGTTCCGC AAAAAGAATC AACTCCTTTC TACCCGCGTT CTCCTTATGC TGTTGCGAAA
ATGTATGCAT ACTGGATCAC GGTTAACTAT AGAGAAGCAT ATAACATGTT TGCCTGTAAC
GGGATTTTGT TTAACCACGA ATCTCCATTA CGTGGAGAAA CATTTGTTAC AAGAAAAATT
ACACGTGCCG TAGCACGTAT TGCTTTAGGT GCACAGGATA AAGTTTACTT AGGCAATCTT
GATTCAAAGC GTGACTGGGG ACATGCAAAA GATTATGTAG AAGCAATGTG GTTAATCCTG
CAACAGAAAA AACCACAAGA CTTTGTAATT GCTACGGGTG TTACCACAAC GGTTAGAGAT
TTTGTTAAAA TGGCGTTTGC CCGTGTTGGT ATCGAAGTAG AATTTAAAGG CAGTGGCGTA
AAAGAAACAG CTGTTGTTAA ATCTTGCAAA AACAAAGAGT TTCAATTAAA AAAAGGAACT
GTTGTTGTTG CAGTAGATAA AGCCTATTTC AGACCAACTG AAGTTGATTT GCTGATCGGA
GATCCTTCCA AGTGTAAAAA GATTTTAAAG TGGAAACCGA AGTACAACCT TGCTATGCTT
GTAAACGAAA TGGTTGACGC AGATGTGCAA TTATTCAAAA AAGACGAATA CCTTAAGAAA
GGTGGATTTA AAACATTAAG TCAATTTGAA TAG
|
|---|
| Protein sequence | MKKALITGVT GQDGAYLSEF LLKKGYEVHG VKRRSSLFNT DRIDHLYVDQ HEKNVKFKLH
YGDLTDSTNL IRIIQEVQPD EIYNLGAMSH VKVSFDTPEY TANADGIGTL RILEAIRILG
LEKKTKIYQA STSELYGLVQ EVPQKESTPF YPRSPYAVAK MYAYWITVNY REAYNMFACN
GILFNHESPL RGETFVTRKI TRAVARIALG AQDKVYLGNL DSKRDWGHAK DYVEAMWLIL
QQKKPQDFVI ATGVTTTVRD FVKMAFARVG IEVEFKGSGV KETAVVKSCK NKEFQLKKGT
VVVAVDKAYF RPTEVDLLIG DPSKCKKILK WKPKYNLAML VNEMVDADVQ LFKKDEYLKK
GGFKTLSQFE
|
|---|
| |