Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0036 |
Symbol | coiA |
ID | 4183685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 46660 |
End bp | 47610 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 28% |
IMG OID | 638070034 |
Product | competence protein; transcription factor |
Protein accession | YP_676670 |
Protein GI | 110636463 |
COG category | [R] General function prediction only |
COG ID | [COG4469] Competence protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000000268846 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000497886 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGATCCACG CTAAAAACGT ACAAGGACAA AAAATTAAAG TTTCTTTTTC AGGAGAAAAG GCAAAGTGCA TTGATTGTGG ACAAGATGTA CGTGGACATA AAGGGAGAAT GAAAATACCA TACTGGCAGC ATTTAAATAA AAAGGACTGC GATGCTTGGT TTGAACCAAT TACCAGATGG CATATTGATT GGCAGAATAA ATTTCCAAAA GAATTTCAAG AAGTAAGTTT AATAGATCCT AACACAAAAG AATTTCATAG AGCTGATGTT AGAACAAATT CTGGATTAGT CATAGAGGTC CAACATTCTC CCATAAAACC CGATGAGATT GAGCAAAGAG AAAATTTTTA TGGAAAAAAT AAATTATTGT GGATTTTAAA TGGTGAAAGT CTATTAAAGC ATTGTAGACT AAATTATCGC TATGAAAAAA AGGAAATGTC ATTATCGTTT GAAATACCTC ATTACTTAGA TAAATCCCCT GAATTTAATT TTCAAGCTTT CAATGAGTAT TTTTTGAAAA GTCAAGCATT AAATAAAATT AGAATCCATC CTGATTTATT AGATTTTGAA AATCAGAATG GAAATTATTT TTTATTTCAT TTCAATAATA GCGTGTCATT TGAATCTATA AAATATGAAC TAATTTATGA TGCCAGAAAA ATTTTAAATA TTTTATTGAA TGAAAAATTT CATGAAGATT ACTTGAACGA GTTTAAAATT AATTATACAG ACATACCGCA AGACAGATTT AGAAACATTA ATCTTATAAA AAAATATTGG AGACCTTTTA TTGATTTGAT GAAACACCCT GTTTTTATTG ACAATCTGGA AGGTATTGAA ACTGACAAGA TATATTTTTA TCAGAAAAAT GAAATTATTG ATAAAGATGA ATTTATTAAG AATATTGAAA AAAGCTGGTT GGCTGGTTAT AATAAGAAGC ATTTATTATA A
|
Protein sequence | MIHAKNVQGQ KIKVSFSGEK AKCIDCGQDV RGHKGRMKIP YWQHLNKKDC DAWFEPITRW HIDWQNKFPK EFQEVSLIDP NTKEFHRADV RTNSGLVIEV QHSPIKPDEI EQRENFYGKN KLLWILNGES LLKHCRLNYR YEKKEMSLSF EIPHYLDKSP EFNFQAFNEY FLKSQALNKI RIHPDLLDFE NQNGNYFLFH FNNSVSFESI KYELIYDARK ILNILLNEKF HEDYLNEFKI NYTDIPQDRF RNINLIKKYW RPFIDLMKHP VFIDNLEGIE TDKIYFYQKN EIIDKDEFIK NIEKSWLAGY NKKHLL
|
| |