| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CHU_0018 |
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| Symbol | cap |
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| ID | 4186899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cytophaga hutchinsonii ATCC 33406 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008255 |
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| Strand | + |
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| Start bp | 19489 |
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| End bp | 21009 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638070016 |
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| Product | polysaccharide biosynthesis protein; permease component |
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| Protein accession | YP_676652 |
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| Protein GI | 110636445 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTGC TCAAAAAATT AGCTGGACAA ACGGCGTTGT ATGGTCTCAG CAGTATGATC
GGCAGAGCCA TCAATTTTTT ATTGGTTCCT GTCTACACCG CATTATTGCT GCCTGCTGAA
TATGGTATTG TTACTGAATT GTATGCATAT GCTGCATTCT TTAATATTCT GTATTTGTTG
GGCATGGAAA CCACATACTT TCGTTTCGCA AATAAAGAAG GCGCTGATGA ACCGCATATT
TTCAATCATG TAAATACACA GGTTCTTTTC GGAAGTTTTA TCATTTCTGC AATTATTTTT
TTAGCAACAC CTGCGATAGC CGCACATTTA AGTAGTGGGA ATGCACAAAA AACAGCCGCT
GATTTCTCTG CATATATTTA TTATGTTGTA TTGATCCTGT TTACGGATGC GGCATTGTCT
ATTGCATTTG CACGCTTGAG AATGAAAAAT AAAGCATTCT GGTTCGCTTC TGTAAAGCTT
ATGAACATTG GCGTTACGGT ATTGCTGAAT GTTATTCTAT TATGGGGAAT TCCGTTGTTG
CTCGTTTCAG ATTCAGTTTC ACAATCAACA AAAGAATTTA TCTTAAACTG GTATGACCCG
GACGATTTAG TTTCTTATAT TTTCCTGTCA AACCTGATCG CCAATTTGTT ACAGCTGCCA
TTTTTACTGA AGGCGTTTAC AGGTTTTAAA TTTGTATGGG ATAAATATCT GTACAAGCCC
ATGCTGGTGT ATGCGCTGCC GCTGATGGTA ATGGGTATGG CAGGTATGAT CAATGAAATG
CTTGACAGGC TGATTCTGCG GGAATTATTG CCTGATGATT TCTATCCGGG CAGCAGCAAA
CTACATGCCC TTGGCGTATA TGGAGCGTGT TACAAGCTAT CGATGTTTAT GACACTTGCT
ATTCAGGCGT TTCGATATGC AGCAGAGCCA TTCTTTTTTA GCAGGGCTTC CGATAAAAAC
TCTCCGCAAC TCTTTGCAGA TATTATGAAG TGGTTTGTAT TGGTGTGTCT GCTGATCCTC
ATCGTTGTTT CGCTCAATCT GGAGTGGATA AAACACTTTC TCAATGAAAG ATATTGGGAA
GGCCTGGGTA TTGTGCCTGT TCTGCTGCTT GCAAATTTGT TTTTAGGTGT ATACTACAAC
CTGGCGATCT GGTTTAAGCT TACAGATAAA ACGTACTGGG GTATTTACAT AAGCTTGTTT
GGCGCAACTG TTACCATCGC AGGGAACATC GTTTTAATAC CCGTGCTGGG TTATATGGGC
GCCGCTTATG TTACGTTGTT TTGTTATGCG TCTATGGCAA TCTGCAGTTA TGTGCTGGGA
AATAAATATT ATCCAATTCC ATATCAAACA GTAAAAATAG TAATATGGAT CATTTCAGCA
GCAGCATTAA TTTGTCTGTT ACGTTATGTT CAGGTAGCAG AAAGTATGAT TAATTTGTTG
ATTAACAATC TCATTATACT GATTTGGCTG GGAGTAATCT TCCTCATAGA AAAACGCACA
AATCGTTCAA AAGCGTCATA A
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| Protein sequence | MSLLKKLAGQ TALYGLSSMI GRAINFLLVP VYTALLLPAE YGIVTELYAY AAFFNILYLL
GMETTYFRFA NKEGADEPHI FNHVNTQVLF GSFIISAIIF LATPAIAAHL SSGNAQKTAA
DFSAYIYYVV LILFTDAALS IAFARLRMKN KAFWFASVKL MNIGVTVLLN VILLWGIPLL
LVSDSVSQST KEFILNWYDP DDLVSYIFLS NLIANLLQLP FLLKAFTGFK FVWDKYLYKP
MLVYALPLMV MGMAGMINEM LDRLILRELL PDDFYPGSSK LHALGVYGAC YKLSMFMTLA
IQAFRYAAEP FFFSRASDKN SPQLFADIMK WFVLVCLLIL IVVSLNLEWI KHFLNERYWE
GLGIVPVLLL ANLFLGVYYN LAIWFKLTDK TYWGIYISLF GATVTIAGNI VLIPVLGYMG
AAYVTLFCYA SMAICSYVLG NKYYPIPYQT VKIVIWIISA AALICLLRYV QVAESMINLL
INNLIILIWL GVIFLIEKRT NRSKAS
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