Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CHU_0016 |
Symbol | |
ID | 4186897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cytophaga hutchinsonii ATCC 33406 |
Kingdom | Bacteria |
Replicon accession | NC_008255 |
Strand | + |
Start bp | 17829 |
End bp | 18701 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638070014 |
Product | hypothetical protein |
Protein accession | YP_676650 |
Protein GI | 110636443 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAGACA TACAAGATCA ATTCAGGATG CAGGATAATG CATTGGTAAA AATTATCCTG ATAAATGTAA TTGTATATGT TGTCGATTGC CTGATCTGGG TTGTAGCGGA ATTATCTAAA ACAGATTGGT TTGCTGTTGT TCAGTCCTAT CAAGGCGTCC CGCCGCAGCT GCAGGAAGTT TTATACAAAC CCTGGACACT CATCACCTAT GCTTTTTCAC ACGACACGCC AAATCCGTTT CACATTTTTT TTAACATGCT GGGCTTGTAT TGGTTTGGCG GTTTAATCCG GGAATATGTC GGCGGCAGGA GATTGATCAG CCTGTATTTT ATCGGCGCAT TGGTTGGTGT TGCCTTATAT CTTATTTGTT ACAACTATAT TCCGTTTTAT ATGGAACGTG CACAGCCAAG ATTCTTAATT GGCGCGAGTG CAAGCGTGCT GGCAGCCGTT GTGGGTGCGG CAACACTGCT GCCAAACTAT AGATTTCATT TAATATTTAT CGGTCCGGTT AAAATCGTTT ATATAGCTGC TTTTTATGTA CTCATTTCAA TAATAGGTTC GGTACAGGGA AATGCCGGCG GAAACATTGC GCATTTAGGA GGCGCGTTTG CAGGATTTAT ATTTATTACC TGTTTGAAAA GAGGGACAGA CCTGGGAAGA CCGATCAACG CAACGTTTGA TTTTTTCAGC CGCCTGTTTT CAAAACGTAA AAATGTACAC ATGACATTCT TTAATTCATC TACCCCCTTA GATGTAAACT ATACACCGAA TCAACAGGAG ATTGATACAA TCCTCGACAA AATCTCGCGT TCAGGATATG AAAGTTTAAC AAAAGAAGAG AAACAAAAAC TTTTCAAAGC AAGCCAGAAA TAA
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Protein sequence | MKDIQDQFRM QDNALVKIIL INVIVYVVDC LIWVVAELSK TDWFAVVQSY QGVPPQLQEV LYKPWTLITY AFSHDTPNPF HIFFNMLGLY WFGGLIREYV GGRRLISLYF IGALVGVALY LICYNYIPFY MERAQPRFLI GASASVLAAV VGAATLLPNY RFHLIFIGPV KIVYIAAFYV LISIIGSVQG NAGGNIAHLG GAFAGFIFIT CLKRGTDLGR PINATFDFFS RLFSKRKNVH MTFFNSSTPL DVNYTPNQQE IDTILDKISR SGYESLTKEE KQKLFKASQK
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