Gene CHU_0016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_0016 
Symbol 
ID4186897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp17829 
End bp18701 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content41% 
IMG OID638070014 
Producthypothetical protein 
Protein accessionYP_676650 
Protein GI110636443 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAGACA TACAAGATCA ATTCAGGATG CAGGATAATG CATTGGTAAA AATTATCCTG 
ATAAATGTAA TTGTATATGT TGTCGATTGC CTGATCTGGG TTGTAGCGGA ATTATCTAAA
ACAGATTGGT TTGCTGTTGT TCAGTCCTAT CAAGGCGTCC CGCCGCAGCT GCAGGAAGTT
TTATACAAAC CCTGGACACT CATCACCTAT GCTTTTTCAC ACGACACGCC AAATCCGTTT
CACATTTTTT TTAACATGCT GGGCTTGTAT TGGTTTGGCG GTTTAATCCG GGAATATGTC
GGCGGCAGGA GATTGATCAG CCTGTATTTT ATCGGCGCAT TGGTTGGTGT TGCCTTATAT
CTTATTTGTT ACAACTATAT TCCGTTTTAT ATGGAACGTG CACAGCCAAG ATTCTTAATT
GGCGCGAGTG CAAGCGTGCT GGCAGCCGTT GTGGGTGCGG CAACACTGCT GCCAAACTAT
AGATTTCATT TAATATTTAT CGGTCCGGTT AAAATCGTTT ATATAGCTGC TTTTTATGTA
CTCATTTCAA TAATAGGTTC GGTACAGGGA AATGCCGGCG GAAACATTGC GCATTTAGGA
GGCGCGTTTG CAGGATTTAT ATTTATTACC TGTTTGAAAA GAGGGACAGA CCTGGGAAGA
CCGATCAACG CAACGTTTGA TTTTTTCAGC CGCCTGTTTT CAAAACGTAA AAATGTACAC
ATGACATTCT TTAATTCATC TACCCCCTTA GATGTAAACT ATACACCGAA TCAACAGGAG
ATTGATACAA TCCTCGACAA AATCTCGCGT TCAGGATATG AAAGTTTAAC AAAAGAAGAG
AAACAAAAAC TTTTCAAAGC AAGCCAGAAA TAA
 
Protein sequence
MKDIQDQFRM QDNALVKIIL INVIVYVVDC LIWVVAELSK TDWFAVVQSY QGVPPQLQEV 
LYKPWTLITY AFSHDTPNPF HIFFNMLGLY WFGGLIREYV GGRRLISLYF IGALVGVALY
LICYNYIPFY MERAQPRFLI GASASVLAAV VGAATLLPNY RFHLIFIGPV KIVYIAAFYV
LISIIGSVQG NAGGNIAHLG GAFAGFIFIT CLKRGTDLGR PINATFDFFS RLFSKRKNVH
MTFFNSSTPL DVNYTPNQQE IDTILDKISR SGYESLTKEE KQKLFKASQK