Gene Meso_3474 details

Gene Information

• Locus tag: Meso_3474
• Symbol: rho
• ID: 4179882
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Chelativorans sp. BNC1
• Kingdom: Bacteria
• Replicon accession: NC_008254
• Strand: -
• Start bp: 3751923
• End bp: 3753212
• Gene Length: 1290 bp
• Protein Length: 429 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 638069369
• Product: transcription termination factor Rho
• Protein accession: YP_676010
• Protein GI: 110635802
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.169204
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTACAAG CAGAGTCCGC CCCTATGCAG GAAATGAAAC TCCAAGAGCT GAAGAGCAAA 
TCGCCGACCG ACCTGATCGC GTTTGCTGAA TCGCTCGAGG TCGAGAACGC CAGCATTATG 
CGCAAGCAGG AGCTGATGTT TGCGATCCTC AAAAAGCTCT CAATGCAGGA CATAGAGATT 
GTTGGGGATG GCGTCGTAGA GGTGCTGCAG GATGGCTTTG GCTTTTTGCG TTCAGCCACC 
GCCAATTACT TGCCGGGCCC GGACGACATT TATATTTCTC CTTCGCAGAT CCGGCGGTTT 
TCTCTGAAGA CAGGCGATAC GGTAGAGGGT CCCATTCGCA GCCCCAAGGA GGGTGAACGT 
TATTTCGCCC TGCTTAAGGT GAACACCATC AACTTCGAGG ACCCGGAGAA GATCCGGCAT 
AAAATCCACT TCGATAACCT TACGCCGCTT TATCCGGATG AGCGGCTGAG GATGGAGATT 
GAGAATCCGA CTACAAAGGA TCTCTCACCG CGGGTGATCG ACTTGGTGGC TCCCCTTGGA 
AAAGGACAAC GCGGGCTTAT CGTTGCTCCG CCACGAACCG GTAAGACCGT TCTGCTCCAG 
AACATCGCCC ACTCAATCAC CACGAACCAC CCGGAATGCT ATCTCATCGT GCTGCTTATC 
GACGAGCGGC CGGAAGAGGT GACCGACATG CAGAGGTCTG TGAAGGGGGA AGTGATTTCC 
TCGACCTTTG ACGAACCGGC TGCCCGGCAT GTCCAGGTAG CAGAGATGGT CATTGAAAAA 
GCAAAGCGCC TCGTGGAGCA TGGGCGTGAC GTTGTGATCC TGCTTGACTC GATCACGCGC 
CTCGGCCGCG CCTACAATAC GGTGGTGCCC TCCTCCGGAA AGGTGTTGAC CGGCGGTGTG 
GACGCCAATG CGCTGCAGCG TCCGAAGCGC TTTTTCGGCG CGGCTCGCAA TATTGAGGAG 
GGTGGCTCGC TTACGATTAT CGCCACCGCG CTCATCGATA CGGGCAGCCG TATGGACGAG 
GTGATCTTTG AAGAATTCAA GGGTACGGGC AACTCGGAAA TTGTGCTCGA CCGCAAGGTC 
GCTGATAAGC GCATCTATCC AGCCATGGAC ATCTTGAAAT CCGGCACGCG CAAGGAGGAT 
CTCCTCGTGC CGCGTCAGGA TTTGCAAAAG ATCTTCGTTT TGCGCAGGAT CCTGGCTCCG 
ATGGGAACAA CGGATGCCAT CGAGTTCCTC ATCGACAAGC TCAAGCAGAC CAAGGGCAAC 
GCCGAATTCT TCGATTCCAT GAATACGTAG 

 

Protein sequence

MLQAESAPMQ EMKLQELKSK SPTDLIAFAE SLEVENASIM RKQELMFAIL KKLSMQDIEI 
VGDGVVEVLQ DGFGFLRSAT ANYLPGPDDI YISPSQIRRF SLKTGDTVEG PIRSPKEGER 
YFALLKVNTI NFEDPEKIRH KIHFDNLTPL YPDERLRMEI ENPTTKDLSP RVIDLVAPLG 
KGQRGLIVAP PRTGKTVLLQ NIAHSITTNH PECYLIVLLI DERPEEVTDM QRSVKGEVIS 
STFDEPAARH VQVAEMVIEK AKRLVEHGRD VVILLDSITR LGRAYNTVVP SSGKVLTGGV 
DANALQRPKR FFGAARNIEE GGSLTIIATA LIDTGSRMDE VIFEEFKGTG NSEIVLDRKV 
ADKRIYPAMD ILKSGTRKED LLVPRQDLQK IFVLRRILAP MGTTDAIEFL IDKLKQTKGN 
AEFFDSMNT